Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43870 456 / 2e-160 Pectin lyase-like superfamily protein (.1) AT3G59850 442 / 5e-155 Pectin lyase-like superfamily protein (.1) AT1G65570 379 / 6e-130 Pectin lyase-like superfamily protein (.1) AT1G05660 376 / 7e-129 Pectin lyase-like superfamily protein (.1) AT2G43860 376 / 1e-128 Pectin lyase-like superfamily protein (.1) AT1G05650 374 / 7e-128 Pectin lyase-like superfamily protein (.1) AT2G43880 367 / 5e-125 Pectin lyase-like superfamily protein (.1) AT2G43890 366 / 6e-125 Pectin lyase-like superfamily protein (.1) AT3G57510 273 / 4e-88 ADPG1 Pectin lyase-like superfamily protein (.1) AT1G80170 266 / 2e-85 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002124 [exp] 547 / 0 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 541 / 0 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10022530 [exp] 494 / 4e-175 AT2G43870 471 / 4e-166 Pectin lyase-like superfamily protein (.1) Lus10011419 [exp] 468 / 8e-165 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 457 / 1e-160 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 456 / 4e-160 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10008343 [exp] 367 / 6e-125 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10010584 [exp] 352 / 1e-118 AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1) Lus10005304 [exp] 342 / 4e-115 AT1G05660 420 / 1e-145 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G144100 [exp] 498 / 8e-177 AT2G43870 525 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G248200 [exp] 481 / 3e-170 AT2G43870 534 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006200 [exp] 471 / 3e-165 AT3G59850 503 / 7e-178 Pectin lyase-like superfamily protein (.1) Potri.017G005800 [exp] 469 / 4e-165 AT3G59850 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 466 / 5e-164 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1) Potri.007G144200 [exp] 464 / 2e-163 AT3G59850 482 / 1e-170 Pectin lyase-like superfamily protein (.1) Potri.008G010700 [exp] 461 / 4e-162 AT3G59850 454 / 7e-160 Pectin lyase-like superfamily protein (.1) Potri.017G003500 [exp] 458 / 5e-161 AT3G59850 498 / 4e-177 Pectin lyase-like superfamily protein (.1) Potri.007G144500 [exp] 456 / 4e-160 AT3G59850 493 / 3e-175 Pectin lyase-like superfamily protein (.1) Potri.017G004500 [exp] 454 / 1e-159 AT3G59850 520 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10002126 pacid=23166344 polypeptide=Lus10002126 locus=Lus10002126.g ID=Lus10002126.BGIv1.0 annot-version=v1.0 ATGGCACCAAAACAAATGAAACTAATTTACACTCAACTCCTACTTACTCTTCTGTTAATCTCCTCATCCTTAACTGCCGCTAGGCAAACGTTCAGTGTCA TAGATCTCGGAGCCAAACCGGACGGGAGGACTGACTCCACGGACGCTTTCGAAGCTGCATGGGGACTGGCATGCGGTTCGACCCGACCGGTGACGTTACA CGTGCCGAAAGGAAGGTTCCTTGTTGAGAGGAGCATGGAGTTGAAGGGACCATGTAGCAATAACGCCATATTCTTTCGCATTGACGGCACCCTCGTCGCC GCCTCTGACATCTGGGCTATTGGCAACGACCCTAACTGGATTGGCTTCCGTAACGTCGACGGCGTCACCATCTCCGGCGGCTTCCTTGATGGCAAGGGCG CCCCTTTGTGGTCCTGCAAGATGAACGACACCCAGAATTGCCCCACCGGCGCTACGACGTTGGGGATATCGAACTCGAAGAATGTAATAGTGAGTCGGGT GACGTCGGTGAACACACATATGTTCCACCTAGTCATAAACCACTGCGAAAATGTGAGGGTGCAAGGTGTAACGCTCATAGCTCCTGGAAACTCCCCTAAC ACCGACGGAATCCATGTCCAGTTATCCACCGGAGTCACCATCGTCAACTCCAAAATCTCCACCGGCGACGATTGCATCTCCATTGGTGCTGGCGCCGTTA ACTTGTGGATCGAGAATGTAGTATGTGGCCCTGGCCACGGCATCAGCATTGGGAGCTTGGGGAAGGCTGTAGAGGAGGAAGGGGTTCAGAACGTAACGGT CAAATCAACAACATTCATAGAAACAACAAATGGGTTGAGAATCAAGTCGTGGGGGAAACCGAGCAATGGATTTGTGAAGAACATTCTTTTCCAACATTCC ACGATGATTGGTGTTCAAAATCCTATCATAATCGACCAATATTATTGTCCAGAACATAACTGTGATGATACGGCATCGGGCGTCCAAGTCAACGACGTGA CTTACGAGGACATACAAGGAACATCGGCTACGGAAGTAGCGGTGAAGTTTGACTGCAGCACAGAGAATCCTTGCAGAGGGATCAGATTGGAGAATGTCAA GCTGACTTACGACCAAGAACCAGCTGCTCAAGTTGTTTCATATTGCTCACACGCGCTTGGAACCGCGATTGGCATTGTCCAACCTACCAGCTGCCTGCAT TAA
AA sequence Show only first row Show all	>Lus10002126 pacid=23166344 polypeptide=Lus10002126 locus=Lus10002126.g ID=Lus10002126.BGIv1.0 annot-version=v1.0 MAPKQMKLIYTQLLLTLLLISSSLTAARQTFSVIDLGAKPDGRTDSTDAFEAAWGLACGSTRPVTLHVPKGRFLVERSMELKGPCSNNAIFFRIDGTLVA ASDIWAIGNDPNWIGFRNVDGVTISGGFLDGKGAPLWSCKMNDTQNCPTGATTLGISNSKNVIVSRVTSVNTHMFHLVINHCENVRVQGVTLIAPGNSPN TDGIHVQLSTGVTIVNSKISTGDDCISIGAGAVNLWIENVVCGPGHGISIGSLGKAVEEEGVQNVTVKSTTFIETTNGLRIKSWGKPSNGFVKNILFQHS TMIGVQNPIIIDQYYCPEHNCDDTASGVQVNDVTYEDIQGTSATEVAVKFDCSTENPCRGIRLENVKLTYDQEPAAQVVSYCSHALGTAIGIVQPTSCLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43870			Pectin lyase-like superfamily ...		Lus10002126 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10023954 [exp]	6.1	0.8529
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10025730 [exp]	7.9	0.9095
AT5G54370			Late embryogenesis abundant (L...		Lus10038588 [exp]	10.7	0.9035
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10036793 [exp]	20.0	0.8483
AT2G43870			Pectin lyase-like superfamily ...		Lus10002124 [exp]	20.9	0.8917
AT5G54370			Late embryogenesis abundant (L...		Lus10026972 [exp]	25.5	0.8886
AT5G57500			Galactosyltransferase family p...		Lus10025474 [exp]	27.1	0.7596
AT5G05340			Peroxidase superfamily protein...		Lus10009935 [exp]	27.5	0.8535
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	27.9	0.8878
AT1G61050			alpha 1,4-glycosyltransferase ...		Lus10011206 [exp]	29.4	0.8878

Compare expression of checked genes

Lus10002126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.