Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19610 171 / 3e-45 Plant protein of unknown function (DUF936) (.1) AT1G08760 153 / 8e-39 Plant protein of unknown function (DUF936) (.1) AT3G14170 142 / 5e-36 Plant protein of unknown function (DUF936) (.1) AT1G70340 133 / 8e-33 Plant protein of unknown function (DUF936) (.1) AT4G13370 125 / 5e-30 Plant protein of unknown function (DUF936) (.1) AT1G23790 124 / 5e-30 Plant protein of unknown function (DUF936) (.1) AT2G31920 90 / 1e-18 Plant protein of unknown function (DUF936) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012367 [exp] 1154 / 0 AT3G19610 174 / 2e-46 Plant protein of unknown function (DUF936) (.1) Lus10026806 [exp] 163 / 3e-42 AT1G08760 732 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10036076 [exp] 162 / 2e-41 AT1G08760 731 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10008138 [exp] 145 / 9e-38 AT3G14170 350 / 8e-117 Plant protein of unknown function (DUF936) (.1) Lus10013177 [exp] 140 / 3e-35 AT3G14170 459 / 9e-158 Plant protein of unknown function (DUF936) (.1) Lus10013007 [exp] 127 / 4e-33 AT1G23790 253 / 6e-82 Plant protein of unknown function (DUF936) (.1) Lus10029158 [exp] 129 / 2e-31 AT1G70340 477 / 2e-164 Plant protein of unknown function (DUF936) (.1) Lus10030870 [exp] 122 / 3e-29 AT1G23790 391 / 6e-131 Plant protein of unknown function (DUF936) (.1) Lus10030619 [exp] 119 / 4e-28 AT1G23790 393 / 5e-132 Plant protein of unknown function (DUF936) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G294600 [exp] 282 / 8e-86 AT3G19610 177 / 2e-47 Plant protein of unknown function (DUF936) (.1) Potri.017G026200 [exp] 157 / 4e-40 AT1G08760 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.007G131600 [exp] 152 / 9e-39 AT1G08760 674 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.003G070200 [exp] 142 / 5e-36 AT3G14170 458 / 2e-157 Plant protein of unknown function (DUF936) (.1) Potri.008G192300 [exp] 132 / 2e-32 AT1G23790 572 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.018G072500 [exp] 120 / 5e-28 AT4G13370 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.009G024800 [exp] 101 / 3e-22 AT2G31920 293 / 1e-91 Plant protein of unknown function (DUF936) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06075 [flax] [poplar] DUF936 Plant protein of unknown function (DUF936)
Representative CDS sequence Show only first row Show all	>Lus10002129 pacid=23166350 polypeptide=Lus10002129 locus=Lus10002129.g ID=Lus10002129.BGIv1.0 annot-version=v1.0 ATGGAGGATTTGGAGTCGGGAGTTCTTGTAAAATTCCTCCAAAGGATGAACGCCCACGGAAAGAAGCTGCGGGATCCAGAGCCCGTACTTCTACAGATCA GAAGCATCATCCCGGTGCTGAAAAACGGCGAGATTTGGCCGAATCAAGGGTTCTTCCTCAAGATTTCGGATCTGACCCACGCCATGTTCGTTTCTTTGCC TCAAGAGCAGGACGAATTGATCTTGGGGAACAAATTGCAGCTGGGCCAGTTCATATACGTCGAGAAACTAGAAGCCGCGTATCCCGTCCCGATGATCAAA GGCGTTAAGCCGATACCAGGTAGACACCCTTGTCTAGGTCATCCGAAAGACCTCCTCCCGAGCGAGAATCTCGAGAAATTCCTAGGGGTATCCAAGTTAG AATCCATATCCGAATGCGGTCAAACCTTGATGACTGCTCCGAAGGTGAGCGTTGACGAAATGAGGGACAGAATCAAGACCTTGAGCTGGTCGATTGATCA GGACAGCAATATTGGGGGCGAAATGACGAAGAAGTCAAGTAATAATAAGGTGAAGAAATCACGTCCGGGAGCTCCGAAAACCAAGAGTCTGTTGAATTAC AGGCCAAGAGGGATGGATGTGGAGAGCACTTTGAGTTTGAGGGCTAATAGGGATGATGAAATGTGGTTACTGAAGAACAATTTCGTCAAGTCGAGGAATC CGGATAGGGATAGTGATACCGAGAGTACGTTGACTAGCGGCTCCAGCAGGAAGAGCTGGAGTAATAATCACAATGATGGTGAAGTTGTGAGGATGGTGGA CAATGCGGATATTCCGGTGCCTCGGGCTACTAGTCCTTGTAGTTCTTCAATTCAGTCGTCTAGAAATGACAGCTCCGATGACAATTTAAGCTGCAAAACC AAGAGGAGACTAACCAGTGTGTCTACAAGATCGTCGAGATCCGTAAGCAAGAATAATGTAGCCGTTTTGCCCTTGTCGAGGAGAATGAGTGAAGATTTCT GTAATCAGAAAGCGATTCCTAGCTCAACAAGTGATAAGAATTCAGAGGATAATAACAGCAACAACAGGCCTTCCTGGGATTATCTTCCTTCTACCTTGGT GAAAATTGGACAGGATGTACTGAGGCAGAGAGACATTGCTCTTTCTACTGCTGTAGAGGCTTTACAGGAGGCTTCTGCTGCTGAGAAATTGCTCAAATGC CTAAGCATATATTCTGAACTGCAAGCAGCCGAGGTGGATGACCAGCATCTAGCGATCGATAAGTTCTTCAGGCTTCAGGAGAATCTGACTCAAGCGCAAC AGATTTTTCGATCACTAACAACTGTCACGCCACCGAACACATTAGCCAACGAGCAAAGCAACCCTCATTTCGCAATGGAGGGACTTAAGCTCGCAATCGA CAGGAGGCAGAACGCATTCTCATGGATAAAAGAAGCTTTAGCATCTGATCTCAGCCCAGTTTCGACACACACCAAGACGGGAACTAATAATTTCTCGGAT GGCAGCCAGGAAGCCAGAAAGTCTCAGAAATCAGGCCACAAGAGCCAGAAACCGAAGGGTATAGTGGTCATTCGAAAGCAGAACAGCAGTGGAGATCATA TGGTGTTCGAGATGGTGCATAATGTAAATAACGGCCAGCAGCAGTCGAGCTGGATCAAGGGGAGTGCATTGCCTGTTTCGATGGAATTAGCTAACTCCCT GAGCGAGGAGTGTAGGACTTGGTTCTTCACTTACATAGAGGACTATTTGGAATGGGTTGGTAGAAGGATTGTGTCTGAAGATGGATCTGATGGCCAAGCT GCTGAAATGATGTACCAGATAAAGAGAGTGAATGACTTCTTGGACAAGAGATGCTTGCAGGATGGATCAGGGTTGAAAGATTCCGAATCGGAAGCTTGTG GGAGAATTAGGAACAAGATTTGTGGGATTCTTCTGAAACATGTTGAGAAAACTTCCATGTCTGAGCATTGGCAGTAA
AA sequence Show only first row Show all	>Lus10002129 pacid=23166350 polypeptide=Lus10002129 locus=Lus10002129.g ID=Lus10002129.BGIv1.0 annot-version=v1.0 MEDLESGVLVKFLQRMNAHGKKLRDPEPVLLQIRSIIPVLKNGEIWPNQGFFLKISDLTHAMFVSLPQEQDELILGNKLQLGQFIYVEKLEAAYPVPMIK GVKPIPGRHPCLGHPKDLLPSENLEKFLGVSKLESISECGQTLMTAPKVSVDEMRDRIKTLSWSIDQDSNIGGEMTKKSSNNKVKKSRPGAPKTKSLLNY RPRGMDVESTLSLRANRDDEMWLLKNNFVKSRNPDRDSDTESTLTSGSSRKSWSNNHNDGEVVRMVDNADIPVPRATSPCSSSIQSSRNDSSDDNLSCKT KRRLTSVSTRSSRSVSKNNVAVLPLSRRMSEDFCNQKAIPSSTSDKNSEDNNSNNRPSWDYLPSTLVKIGQDVLRQRDIALSTAVEALQEASAAEKLLKC LSIYSELQAAEVDDQHLAIDKFFRLQENLTQAQQIFRSLTTVTPPNTLANEQSNPHFAMEGLKLAIDRRQNAFSWIKEALASDLSPVSTHTKTGTNNFSD GSQEARKSQKSGHKSQKPKGIVVIRKQNSSGDHMVFEMVHNVNNGQQQSSWIKGSALPVSMELANSLSEECRTWFFTYIEDYLEWVGRRIVSEDGSDGQA AEMMYQIKRVNDFLDKRCLQDGSGLKDSESEACGRIRNKICGILLKHVEKTSMSEHWQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19610			Plant protein of unknown funct...		Lus10002129 [exp]	0	1
AT2G24370			Protein kinase protein with ad...		Lus10020184 [exp]	9.2	0.5997
AT1G18090			5'-3' exonuclease family prote...		Lus10038958 [exp]	12.2	0.6663
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001952 [exp]	76.1	0.5995
					Lus10037800 [exp]	99.2	0.5726
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011576 [exp]	165.7	0.5539
AT3G27470			Protein of unknown function (D...		Lus10003659 [exp]	244.6	0.5308

Compare expression of checked genes

Lus10002129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.