Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14740 990 / 0 VSR2;2, BP80-2;2, ATVSR3 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) AT2G14720 976 / 0 VSR4, VSR2;1, MTV4, BP80-2;1, VSR-2 VACUOLAR SORTING RECEPTOR 2;1, binding protein of 80 kDa 2;1, vacuolar sorting receptor 4 (.1.2) AT3G52850 863 / 0 VSR1;1, GFS1, BP80-1;1, ATVSR1, VSR-1, VSR1, BP80B, BP-80, BP80, ATELP1 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) AT2G30290 828 / 0 VSR2, VSR1;2, BP80-1;2, AtVSR2 VACUOLAR SORTING RECEPTOR 1;2, binding protein of 80 kDa 1;2, VACUOLAR SORTING RECEPTOR 2 (.1.2) AT1G30900 735 / 0 VSR6, VSR3;3, BP80-3;3 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) AT4G20110 734 / 0 VSR7, VSR3;1, BP80-3;1 VACUOLAR SORTING RECEPTOR 3;1, binding protein of 80 kDa 3;1, VACUOLAR SORTING RECEPTOR 7 (.1.2) AT2G34940 682 / 0 VSR5, VSR3;2, BP80-3;2 VACUOLAR SORTING RECEPTOR 3;2, binding protein of 80 kDa 3;2, VACUOLAR SORTING RECEPTOR 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012366 [exp] 1199 / 0 AT2G14740 1055 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10020967 [exp] 1091 / 0 AT2G14740 1077 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10022737 [exp] 855 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10014176 [exp] 840 / 0 AT3G52850 980 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025136 [exp] 834 / 0 AT3G52850 959 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10006944 [exp] 717 / 0 AT1G30900 926 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Lus10025220 [exp] 671 / 0 AT3G52850 754 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025361 [exp] 442 / 1e-150 AT2G14740 454 / 2e-155 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G294400 [exp] 1038 / 0 AT2G14740 1100 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.009G088900 [exp] 1028 / 0 AT2G14740 1089 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.006G108800 [exp] 874 / 0 AT3G52850 1026 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.016G137300 [exp] 870 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.003G155200 [exp] 754 / 0 AT1G30900 924 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.001G075600 [exp] 726 / 0 AT1G30900 911 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.016G137350 [exp] 170 / 7e-50 AT3G52850 212 / 2e-66 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.003G155300 [exp] 66 / 7e-13 AT1G30900 86 / 1e-20 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0001 [flax] [poplar] EGF PF07645 [flax] [poplar] EGF_CA Calcium-binding EGF domain
Representative CDS sequence Show only first row Show all	>Lus10002130 pacid=23166345 polypeptide=Lus10002130 locus=Lus10002130.g ID=Lus10002130.BGIv1.0 annot-version=v1.0 ATGGCGTGTTTGATTGTACCGAGTTGTGTGGCGAGATTCATCGTGGAAAAGAACAATCTGAGAGTGACGTCGCCGGACAAGATAAAGGGTACGTACGACA CTGCGATTGGTAACTTTGGGATACCTAAATATGGAGGTAGCATGGCGGGGAATGTGGTTTATCCTAAGGACAACAGAAACGCCTGCAAGGAGTTTTCGGA TTTCGGGATTTCATTCAAGTCCAAGCCTGGAGCTTTGCCCACTTTCGTTTTAGTGGATCGTGGAGTTAGTCTGCTTGGTTCTCCAGTGAACTTCCATTTC AAGAAGGGAGGGGCTTCTGCGGTGCTTGTTGCAGATGACATCGATGAAGCATTGATAACCATGGACACACCACAAGAAGGTGGTGCCTCTGCAAACTATG TTGAAAACATTACAATACCTTCTGCTCTTATCGAGAAAAGCTTCAGTAACGTGCTGAAAAAATCATTGAGCAGTGGGGATATGGTTAATGTAAACCTTGA TTGGAGAGAAGCCGTTCCACATCCGGATGACCGTGTGGAGTATGAGTTGTGGTCAAACAGTAACGACGAATGTGGTGTTAAATGTGATATGTTGATGGAA TTTGTAAAGGATTTCAAGGGTCCAGCTCAGATACTTGAGAGAGGTGGCTACACTCATTTCACTCCTCATTACATAACTTGGTATTGTCCACAGGCATTTA CACTGAGCAGACAATGCAAGTCGCAATGCATAAATCATGGAAGATATTGTGCTCCTGATCCTGAGCAGGATTTCAGCATTGGTTATGATGGGAAAGATGT TGTTCTTGAGAACTTGAGACAACTGTGCGTTTTTCTAGTAGCGAATGAGAGCCAAAGACCCTGGACTTGGTGGGACTACGTAACCGATTTCCAAATCCGA TGTCCGATGAAAGAGAAAAAATACAACAAAGAATGTTCTGATAGTGTTGTTAGATCTCTTGGACTTGATATGAAAAAGATCGAGAGGTGTATGGGAGACC CAGATGCTGATGCCGATAATCTTGTTCTGAAAGCTGAGCAAGATGCTCAGGTCGGCAAAGGACAAAGGGGCGATGTAACTATACTGCCCACTCTTGTAGT AAACAATCGACAATATCGAGGGAAGTTGGCGAAAAGTGCTGTTCTGAAGGCCATATGTTCTGGTTTTGAGGAAACTACTGAACCAGCTGTGTGCTTGACT AGTGATATTGAGTCAAATGAGTGCTTGGAGAACAATGGTGGTTGTTGGAAAGATGAGGTTGCGAACATCTCTGCTTGCAGGGATACATTTCGAGGGAGGG TATGCGAGTGCCCCCTTGTTGATGGTGTGCAGTTTAAAGGAGATGGTTACAGCCACTGTGAAGTGAGTGGACCTGGAAGGTGCAAGATAAATAATGGTGG CTGCTGGCATGAATCACGAGATGGCCATGCGTTCTCTGCCTGTTTGGATGTAGGTGGAGGTAAATGCCAGTGTCCTACTGGATTTAAGGGAGATGGTGTA AAGGGTTGTGTGGATGTTGATGAGTGCAAGGAAAAGAAAGCATGCCAATGTGCAGAATGCAGCTGCGCGAACACATGGGGAAGTTACGATTGCAGTTGCA GCAGAGGTCTGATTTATATCAGGGACCATGATACCTGCATAGGTAAAGCAGGCGCCACCGAAGTGAGATCTGCATGGGCTGCTGTGTGGGTCATCTTTAT TGGCTTGGCAATGGCTGCTGGTGGAGGATATCTCATCTACAAGTATCGATTGAGGTCGTACATGGACTCGGAGATTAGGGCGATCATGGCACAATACATG CCTCTCGAGAGTCAAGCAGACCTGCAGAATCACCTCAATGACCAACACGCATGA
AA sequence Show only first row Show all	>Lus10002130 pacid=23166345 polypeptide=Lus10002130 locus=Lus10002130.g ID=Lus10002130.BGIv1.0 annot-version=v1.0 MACLIVPSCVARFIVEKNNLRVTSPDKIKGTYDTAIGNFGIPKYGGSMAGNVVYPKDNRNACKEFSDFGISFKSKPGALPTFVLVDRGVSLLGSPVNFHF KKGGASAVLVADDIDEALITMDTPQEGGASANYVENITIPSALIEKSFSNVLKKSLSSGDMVNVNLDWREAVPHPDDRVEYELWSNSNDECGVKCDMLME FVKDFKGPAQILERGGYTHFTPHYITWYCPQAFTLSRQCKSQCINHGRYCAPDPEQDFSIGYDGKDVVLENLRQLCVFLVANESQRPWTWWDYVTDFQIR CPMKEKKYNKECSDSVVRSLGLDMKKIERCMGDPDADADNLVLKAEQDAQVGKGQRGDVTILPTLVVNNRQYRGKLAKSAVLKAICSGFEETTEPAVCLT SDIESNECLENNGGCWKDEVANISACRDTFRGRVCECPLVDGVQFKGDGYSHCEVSGPGRCKINNGGCWHESRDGHAFSACLDVGGGKCQCPTGFKGDGV KGCVDVDECKEKKACQCAECSCANTWGSYDCSCSRGLIYIRDHDTCIGKAGATEVRSAWAAVWVIFIGLAMAAGGGYLIYKYRLRSYMDSEIRAIMAQYM PLESQADLQNHLNDQHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10002130 [exp]	0	1
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10019917 [exp]	4.2	0.9720
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10011500 [exp]	4.9	0.9716
AT4G02900			ERD (early-responsive to dehyd...		Lus10028000 [exp]	5.0	0.9668
AT5G60720			Protein of unknown function, D...		Lus10016114 [exp]	5.5	0.9706
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10007497 [exp]	6.0	0.9662
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10012366 [exp]	6.6	0.9596
AT5G45370			nodulin MtN21 /EamA-like trans...		Lus10037284 [exp]	7.6	0.9488
AT3G25290			Auxin-responsive family protei...		Lus10038225 [exp]	8.4	0.9464
AT5G22930			Protein of unknown function (D...		Lus10038677 [exp]	8.8	0.9282
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10042009 [exp]	9.5	0.9600

Compare expression of checked genes

Lus10002130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.