Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14835 423 / 3e-149 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012365 [exp] 609 / 0 AT2G14835 461 / 4e-164 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G089100 [exp] 501 / 4e-180 AT2G14835 485 / 1e-173 RING/U-box superfamily protein (.1.2) Potri.001G294200 [exp] 493 / 5e-177 AT2G14835 476 / 5e-170 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002131 pacid=23166357 polypeptide=Lus10002131 locus=Lus10002131.g ID=Lus10002131.BGIv1.0 annot-version=v1.0 ATGGTGGTCTGCAAATGCCGGAAGGCTACTAAATTGTATTGTTTCGTACACAAGGTCCCTGTCTGCGGGGAATGCATCTGCTTCCCGGAGCATCAGATAT GCGTGGTTCGTACTTACTCAGAGTGGGTTATAGATGGAGGGTATGATTGGCCCCCCAATTGCTGCTCATGCCATGCTGTATTAGATGAGGGTTCTGGTGA AACAACTCGATTGGGCTGCATGCATGTGATACACACAAATTGTTTGGTTTCTCATGTCAAAAGTTTTCCTCCACACACTGCACCAGCTGGATACGTCTGC CCTTCTTGTTCAATACCGATATGGCCTCCCAAAAATGTTAAGGACTCAGGATCTCGTTTCCATTCAAAGCTGAAAGAAGCTATTATCCAGGCATGTACTC TTACGGGCATCGAAAAGAATTTGTTTGGAAATCATCCAGTTTCCTTTCCGGCACCACCTCCTGCATTTGCGTCAGATCCATTGGTCTCCATCTCTTCTTC ATCATTGTCGGCAAAAGATGATTCTGGGAAGATTCCTTCTATGATTTCAGTCCCAGACATTGTAGAGGTTGAAAGCCCAAGTTCTGCAGCAAATTATATG AAAAATTCTAGTCCTGCTGCTCCTGGGGCCACGACTAGAAAAGGCGGTATCCAAGTTGAGAGGCAAAATTCAGATATGTCATACAATGAAGATGATGAAG ATGGAAATCGTAAAAAGTACAGTCGAAGGGGTCCAATCCAACACAAGTTCCTTAGAGCTCTGCTTCCGTTCTGGTCAAGTGCATTACCAACTTTACCAGT GACTGCTCCTTCCCGGAAAGATGGAACGAATGCTGACGATACCCCGGAAGTCCGTACAAGGCATCACAGATCATCAAGGATGGACCCCAGAAAAATACTT CTCTTCATAGCAATCATGGCGTGTATGGCGACCATGGGAATACTATACTACAGAATCGCACAAAGTGGATTTGGCGACGAGCCAGGTGATGAGCAGCAGT AA
AA sequence Show only first row Show all	>Lus10002131 pacid=23166357 polypeptide=Lus10002131 locus=Lus10002131.g ID=Lus10002131.BGIv1.0 annot-version=v1.0 MVVCKCRKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGGYDWPPNCCSCHAVLDEGSGETTRLGCMHVIHTNCLVSHVKSFPPHTAPAGYVC PSCSIPIWPPKNVKDSGSRFHSKLKEAIIQACTLTGIEKNLFGNHPVSFPAPPPAFASDPLVSISSSSLSAKDDSGKIPSMISVPDIVEVESPSSAANYM KNSSPAAPGATTRKGGIQVERQNSDMSYNEDDEDGNRKKYSRRGPIQHKFLRALLPFWSSALPTLPVTAPSRKDGTNADDTPEVRTRHHRSSRMDPRKIL LFIAIMACMATMGILYYRIAQSGFGDEPGDEQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14835			RING/U-box superfamily protein...		Lus10002131 [exp]	0	1
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10022326 [exp]	1.7	0.9042
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	2.4	0.9034
AT2G15240			UNC-50 family protein (.1)		Lus10027865 [exp]	4.9	0.8711
AT3G03570			Protein of unknown function (D...		Lus10020328 [exp]	5.5	0.8690
AT2G26680			unknown protein		Lus10019418 [exp]	6.0	0.8755
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	7.7	0.9024
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	8.4	0.8906
AT1G08760			Plant protein of unknown funct...		Lus10026806 [exp]	8.4	0.8751
AT1G14380		IQD28	IQ-domain 28 (.1.2.3)		Lus10013261 [exp]	12.0	0.8536
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	12.2	0.8942

Compare expression of checked genes

Lus10002131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.