Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79440 56 / 6e-10 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT5G11040 42 / 4e-05 AtTRS120 TRS120 (.1) AT1G74920 39 / 0.0007 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003912 [exp] 56 / 3e-10 AT4G14180 68 / 8e-13 putative recombination initiation defect 1 (.1) Lus10001845 [exp] 55 / 2e-09 AT1G79440 741 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Lus10013164 [exp] 47 / 1e-06 AT5G11040 1683 / 0.0 TRS120 (.1) Lus10008127 [exp] 47 / 1e-06 AT5G11040 1804 / 0.0 TRS120 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G174000 [exp] 55 / 2e-09 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.018G022500 [exp] 46 / 2e-06 AT5G11040 1758 / 0.0 TRS120 (.1) Potri.006G259500 [exp] 45 / 7e-06 AT5G11040 1761 / 0.0 TRS120 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002132 pacid=23181281 polypeptide=Lus10002132 locus=Lus10002132.g ID=Lus10002132.BGIv1.0 annot-version=v1.0 ATGGCTACGTTGGTTTTCCAGGTACCCGCTTGTACAGTTTTCCTCTTTATTTCCAAAATTCCAATCCATTTCTCAAAGTTCAGTCTGATCGACTCTGGAT CCTTAGTGGCAGAGACTGTGGTAGCTACCGGGGTGGTTATCAAGGCCAAAAACAGAAGACTTGCCCGAGCGCAGAAGACCATTGGGGATTACTGTTTGAT GGCTTTTGGAGGTATGGTCTTCCGCTCTTTTGACTTCATGAAGGGGCAGAAGTTCTGCTTGGGGGTTGCCCCGTTTGGAGCGGTGAAACAGTCCGGTCTT GGGCTGGAAGGTTCCAAGTATGGGATGGACGAATATCTGGAGGTATGCTTTTCTGCCATGTTTTCCCCAAAAGACAGTGCGTTGAGGTCGCCACTTACCA AATACCTGCCTTAA
AA sequence Show only first row Show all	>Lus10002132 pacid=23181281 polypeptide=Lus10002132 locus=Lus10002132.g ID=Lus10002132.BGIv1.0 annot-version=v1.0 MATLVFQVPACTVFLFISKIPIHFSKFSLIDSGSLVAETVVATGVVIKAKNRRLARAQKTIGDYCLMAFGGMVFRSFDFMKGQKFCLGVAPFGAVKQSGL GLEGSKYGMDEYLEVCFSAMFSPKDSALRSPLTKYLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79440		ENF1, SSADH1, A...	SUCCINIC SEMIALDEHYDE DEHYDROG...		Lus10002132 [exp]	0	1
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10043299 [exp]	6.0	0.7133
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10042079 [exp]	9.3	0.6914
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10006269 [exp]	26.4	0.6898
AT4G10950			SGNH hydrolase-type esterase s...		Lus10026771 [exp]	27.6	0.5669
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10031041 [exp]	28.0	0.6837
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10032903 [exp]	39.8	0.6559
AT4G32050			neurochondrin family protein (...		Lus10032403 [exp]	42.4	0.6825
AT3G12040			DNA-3-methyladenine glycosylas...		Lus10021071 [exp]	50.0	0.6144
AT4G30900			DNAse I-like superfamily prote...		Lus10036263 [exp]	54.4	0.6370
AT4G10950			SGNH hydrolase-type esterase s...		Lus10008404 [exp]	72.9	0.5440

Compare expression of checked genes

Lus10002132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.