Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32090 1101 / 0 early-responsive to dehydration stress protein (ERD4) (.1) AT4G02900 893 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT3G21620 893 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT1G11960 868 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G04340 866 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT4G22120 862 / 0 ERD (early-responsive to dehydration stress) family protein AT4G15430 853 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT1G62320 835 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT3G01100 402 / 6e-129 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 369 / 1e-116 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030024 [exp] 908 / 0 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10035300 [exp] 897 / 0 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10015551 [exp] 880 / 0 AT4G22120 1183 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10020032 [exp] 866 / 0 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10028000 [exp] 843 / 0 AT4G02900 1116 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10000660 [exp] 842 / 0 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10024477 [exp] 841 / 0 AT1G11960 1072 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002996 [exp] 839 / 0 AT4G22120 1087 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10005223 [exp] 416 / 6e-134 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G133800 [exp] 1193 / 0 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.003G099800 [exp] 1184 / 0 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.002G226800 [exp] 915 / 0 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.014G156100 [exp] 911 / 0 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.011G009900 [exp] 886 / 0 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006100 [exp] 874 / 0 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006000 [exp] 862 / 0 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G005900 [exp] 840 / 0 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G115800 [exp] 437 / 2e-142 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.008G091200 [exp] 405 / 5e-130 AT1G69450 872 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10002133 pacid=23181295 polypeptide=Lus10002133 locus=Lus10002133.g ID=Lus10002133.BGIv1.0 annot-version=v1.0 ATGGCGACTCTTGCAGATATTGGCGTCTCAGCCGCCATTAATATCCTCTCAGCTTTCGCCTTCCTCCTCGCTTTCGCTCTCCTCAGACTTCAGCCGGTCA ATGACCGAGTCTACTTCCCTAAATGGTACCTCACCGGCGCCAGAACAGGAAGCCCCCGGAACAACGACCGTGGCTTTGTCGGAAAATTGGTCAACCTCAA TTTTACCACATACTTCACTTTCTTGAACTGGATGCCTCAGGCCTTGAAGATGTCTGAGGCCGAAATTATCAGCCACGCTGGCCTTGACTCCGCTGCTTTC CTCCGGATTTACATTCTCGGGTTAAAGATTTTTGTTCCTGTGACAATCTTGGCACTCCTAATTTTGATTCCAGTCAATGTATCAAGTGGAACATTGTTCT TTCTCAGAAAAGAATTGGTTGTTAGCGACATTGACAAGTTATCAATATCGAATGTCCGTCCAGAGTCCAACAGATTTTTTGTCCACATAGCATTGATGTA TTCGTTCAGCTTGTGGACTTGCTGCATGCTTTACAAGGAATATGATTATGTGACATCAATGAGGTTACGATTTTTGGCTTCTCAGCAAAGGCGTGCTGAG CATTTTACTGTCGTTGTTAGAAATATTCCACACATTTCTGGTCAGTCAAAATCAGACACAGTTGAGCAGTTTTTCCAGAAAAATCATCCAACTACTTATC TTTTGCAGCAGGCTGTCTATAACGCGAACAAGTTCGCTAAACTTGTAAGAAAAAGAGATAGTCTTCAGAATTGGCTGGACTATAATCAGCTCAAGTCTGA AAGGAATCCAGAGAAGATGCCTACACGAAAGACAGGATTTTTGGGCCTATGGGGCAAGAAGGTGGACTCCATTGAATATTACAAGAATCAAATCAAAGTT CTGGAAAGAAGAATGGCAGTGGAACGTCACTCGATTTTCAAAGATTCAAAAGCGATCTTACCAGTTGCTTTTGTTTCATTCAAGTCTCGTTGGGGAGCTG CTGTTTGTGCTCAGACACAACAAAGCAAGAACCCTACTTTATGGTTGACAAGTTGGGCACCGGAACCGCGTGATATTTATTGGCGTAACTTGGCCATACC ATTTGTCTCATTGACCATCAGGAAGCTTATAATATCCGTTTCTGTTTTTGCTTTGGTCTTCTTCTACATGATACCCATTGCTTTTGTTCAATCTCTTGCA AATTTGGAGGGCCTTGAAAGGGTTGCTCCTTTTCTCAAGCCAGTAATAGAACTAAAATTCATCAAGTCTTTCCTTCAAGGCTTCCTCCCCGGATTGGCTC TTAAAATATTTTTGTACATTCTACCAACAATTTTGATGATGATGTCGAAGATTGAGGGATATATCGCAGTATCAAATCTTGAAAGGAGATCAGCAGCCAA GTATTATTATTTCATGTTGGTGAATGTCTTCCTCGGAAGTATAATAACTGGAACAGCTTTTCAGCAGCTGCATTCTTTCCTTCACCAGTCACCAACACAG ATTCCAAGAACTATAGGAGTTTCCATACCGATGAAGGCTACCTTTTTCATTACCTACATTATGGTTGATGGCTGGGCTGGAATCGCTGGTGAGATTCTCA GACTGAAGCCGTTGGTAATATTTCATTTGAAGAACCTGTTTCTAGTAAAGACAGAAAGGGACAGAGAGAAGGCGATGGACCCTGGCAGTGTGGATTATCC CGAGACTCTGCCAAGCCTTCAGTTATACTTTCTATTGGGACTTGTATATGCAGTTGTCACTCCCATCTTGCTTCCCTTCATACTCGTGTTCTTTGCCTTT GCATACTTGGTTTATCGCCACCAGATAATCAATGTGTACAATCAACAGTATGAGAGTGCTGCTGCATTCTGGCCACATGTTCACAGCCGCATAATAACCA GCCTGCTGATAGCTCAAGTACTGTTGATGGGGTTGCTCGCTACCAAAAAGGCTGCCAATTCCACTCCTTTGCTCGTCATCTTGCCAATATTGACATTATA TTTTCACAAGTACTGCAAGCATCGATTTGAACCAGCATTCAGAAAGTACCCAGTTGAGGCAAGTGGATTCTATTCACCTTATCCCATAAACAAAAATGAA GAGGCCATGGCAAAGGACCTTGCAGACAATACTGCAGGCTCGGACATAAATTTAAAAGCCTATCTTTCTGATGCTTATTTGCATCCAATTTTCCATTCAT TTGAAGAAGAGGAGCTGGTTGAAGTGAGAGTAGATAAACAGCAGATAAGAGGTGCCCAAACCATTGAACCCAGTTCCCCATCTCCACCAAAACCAGTTCA TCAGGCTTCTTCTTCGCCACAACGACATCAAGCTATCTATAATCAACCTGAGTATCAATATGATCCTTCCATACCATCACATTACATATACCATGACTAT GACCATCCTTCAGTTTCCTCCCAGTACGTCTACCAGTATCAAAATGATCATTGA
AA sequence Show only first row Show all	>Lus10002133 pacid=23181295 polypeptide=Lus10002133 locus=Lus10002133.g ID=Lus10002133.BGIv1.0 annot-version=v1.0 MATLADIGVSAAINILSAFAFLLAFALLRLQPVNDRVYFPKWYLTGARTGSPRNNDRGFVGKLVNLNFTTYFTFLNWMPQALKMSEAEIISHAGLDSAAF LRIYILGLKIFVPVTILALLILIPVNVSSGTLFFLRKELVVSDIDKLSISNVRPESNRFFVHIALMYSFSLWTCCMLYKEYDYVTSMRLRFLASQQRRAE HFTVVVRNIPHISGQSKSDTVEQFFQKNHPTTYLLQQAVYNANKFAKLVRKRDSLQNWLDYNQLKSERNPEKMPTRKTGFLGLWGKKVDSIEYYKNQIKV LERRMAVERHSIFKDSKAILPVAFVSFKSRWGAAVCAQTQQSKNPTLWLTSWAPEPRDIYWRNLAIPFVSLTIRKLIISVSVFALVFFYMIPIAFVQSLA NLEGLERVAPFLKPVIELKFIKSFLQGFLPGLALKIFLYILPTILMMMSKIEGYIAVSNLERRSAAKYYYFMLVNVFLGSIITGTAFQQLHSFLHQSPTQ IPRTIGVSIPMKATFFITYIMVDGWAGIAGEILRLKPLVIFHLKNLFLVKTERDREKAMDPGSVDYPETLPSLQLYFLLGLVYAVVTPILLPFILVFFAF AYLVYRHQIINVYNQQYESAAAFWPHVHSRIITSLLIAQVLLMGLLATKKAANSTPLLVILPILTLYFHKYCKHRFEPAFRKYPVEASGFYSPYPINKNE EAMAKDLADNTAGSDINLKAYLSDAYLHPIFHSFEEEELVEVRVDKQQIRGAQTIEPSSPSPPKPVHQASSSPQRHQAIYNQPEYQYDPSIPSHYIYHDY DHPSVSSQYVYQYQNDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32090			early-responsive to dehydratio...		Lus10002133 [exp]	0	1
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	3.2	0.8195
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020314 [exp]	5.7	0.7465
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	6.0	0.7864
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	6.5	0.8040
AT5G46190			RNA-binding KH domain-containi...		Lus10038509 [exp]	10.1	0.7754
AT2G17020			F-box/RNI-like superfamily pro...		Lus10023988 [exp]	11.2	0.7894
AT2G02148			unknown protein		Lus10035090 [exp]	11.6	0.7642
AT1G17665			unknown protein		Lus10003829 [exp]	12.6	0.6971
AT4G32910			unknown protein		Lus10011625 [exp]	16.1	0.7837
AT3G07565			Protein of unknown function (D...		Lus10025582 [exp]	17.9	0.7171

Compare expression of checked genes

Lus10002133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.