Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03050 1336 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 1323 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT4G38190 1237 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT1G02730 1203 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT2G33100 1157 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G32180 1141 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G05170 772 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G17420 762 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT4G18780 756 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT5G09870 737 / 0 CESA5 cellulose synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009248 [exp] 1322 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10012119 [exp] 1256 / 0 AT5G16910 1285 / 0.0 cellulose-synthase like D2 (.1) Lus10013851 [exp] 1249 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10030453 [exp] 1240 / 0 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10010024 [exp] 1225 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10022982 [exp] 1224 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026568 [exp] 1219 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10038008 [exp] 1203 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10000755 [exp] 1069 / 0 AT2G33100 1590 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G136200 [exp] 1402 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G097100 [exp] 1387 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.019G049700 [exp] 1354 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.013G082200 [exp] 1346 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.009G170000 [exp] 1248 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.004G208800 [exp] 1212 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.014G125100 [exp] 1208 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 1194 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.003G177800 [exp] 1118 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 1118 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10002134 pacid=23181300 polypeptide=Lus10002134 locus=Lus10002134.g ID=Lus10002134.BGIv1.0 annot-version=v1.0 ATGGCAAACAACAATGGGCGAAGAGCGGCTGCTTCTCCTGCAATTCATCAGTTGAGCAACTCCAGAGACTTTGACAGCGACATTGGCAGCGTGGAATTCT CCACATACACCGTCCACATCCCTCCTACTCCGGATAATCAGCCCATGGAGTCTCCCCAATCTTCCCCTCCTTTCCGCAAACCAGCCTCGTCCTCCTCCAC TTACATGTATCACCAGCAAGTCCAACCCTCCTCTGTTCGCGGCGCCATGACCATGACTCTGCCAATCCCAGCTGCCTCCTCTTTCTGTCAGGTCCCTGGA TGCGACGCCGTGGCTGATGAATTCTTCTTCCCCTGTGATTGCGAGTTCAGGATTTGCAGGGATTGTTTCAATGACGCCGCCGGGGATGGGATTTGCCCTG GATGCAAGTCTCCTTATCATCAGGATTACGAAGCAGCTCAGCTTCAGGTGGATCGGACTCTGTCGGTTATTAAGAAACCTGCTACCGTGATTCACAACGA TTTCGAGTCCTCCGATTCGGATTTCTTGTTCGATTCTTCCAAAAAGGATTACGTTAATGCAGCATGGTCCGGCAGTAGTGCTGACCATGACCAGCACCCA AATATGAATATCCCTGCTGCCGAGCGGAAGCCGCTCACTCGCAAACTCAATATCCCTGCTACTATTCTTGGCCCCTATCGGGCATTGATCCTAATTCGTA TGATCGCTCTGGCAATGTTCATCGAATGGCGAGTCACAAATCCCAACGAGGAAGCGATGTGGCTGTGGGGGATGTCAGTGATATGCGAGCTCTGGTTTTC ATTCTCATGGCTATTGGACCAGCTACCGAAGCTCTGTCCTGTAAAGCGAGAGGTGGATCTCCAAGTCCTTAAGGAAAAATTCGAGACTCCCAATCCCAAC AATCCCACTGGAAAATCCGACCTCCCGGGGGTCGACTTCTTCGTTTCCACGGCTGATCCGGAGAAAGAGCCCCCGCTCGTCACCGCTAACACCATCCTCT CCATCCTCGCAGCAGATTACCCAGTCGAGAAACTCTCCTGCTACGTTTCAGACGATGGAGGCGCTCTCCTCACCTTCGAGGCCATGGCAGAGGCAGCCAG CTTTGCTCGCCTTTGGGTTCCCTTTTGCCGGAAGCACAACGTGGAGCCGCGGAACCCTGAGTCGTATTTTAACTTGAAAACAGATCCCTATAAGAATAAA GTTCGAGCAGACTTCGTGAGGGATAGAAGGCGGGTCAAGCGGGAATACGATGAGTTTAAGGTTTGTGTCAATGGTTTGCCCAACTCCATTCGGCGGCGGT CGGATGCTTATAATACTCACGAGGAGATTAAGATAATGAAGAAGGTTAAAGAAAGATCAGGAGATGGAGATGATGACGAGGACGAGCAGATAATGATTGA TAGAGTGAAGATCCCCAAAGCGACTTGGATGACTGATGGAACTCATTGGGCCGGCACCTGGACCACGCCTTCTCCTGACCACACAAGAGGAGACCATGCC AGCATCATTCAAGTTATGCTCCAGGCACCAAGCGAGGAGCCAATAAAAGGATCGACATCAGATGGTAATTCAATGGACCTAAGTGAGGTAGACATCCGGC TACCAATGCTAGTGTACGTTTCTCGAGAGAAGCGCCCTGGCTACGATCACAACAAAAAAGCAGGGGCGATGAACGCTTTGGTTCGAGCTTCCGCAGTCAT GTCTAACGGTCCTTTCATACTCAACCTGGACTGCGACCACTACATCTACAACTCGGAAGCATTAAGAGAAGGGATGTGCTTCATGATGGACACTGACGGG GATAGCATATGCTATGTCCAGTTCCCTCAAAGATTCGAAGGGATTGACCCTTCTGATCGATATGCCAATCAGAACACAGTCTTCTTTGATGTTAATATGC TAGCTTTGGATGGGATTCAAGGCCCTGTCTATGTCGGAACGGGGTGCCTGTTTCGTCGCACGGCCATCTACGGATTTGAACCACCTTCAGCCAAACAGAG CAAGAGGAATGTTGATCAGGATGATGCAGATGCTTTTCTAATCCCTAAGAAGTTTGGTAACTCAAGTATGCTAGTAGATTCTGTCCCTACAGCTGCATAC CAAGGATTACCTCTTGCTGATCATCCCTCTATGAAGAATGGCCGACCTCCAGGTGCGTTGATCGGTCCACGAGAGCCTGTAAACACGGGAACGATAGGAG AGGCTGTGAATGTTATCTCATGTTGGTACGAGGACAAGACGGAATGGGGAGTAAACGTTGGTTGGATATACGGTTCGGTAACAGAGGATGTGGTGACTGG ATTCAGAATGCACGAAAAAGGTTGGAGATCAGTGTACTGTATGACAAAACGAGACGCATTTCGGGGCACTGCCCCTATTAACCTCACGGATCGCCTCCAC CAGGTGTTGCGATGGGCAACTGGGTCTGTTGAAATCTTCTTTTCTCGAAACAATGCACTTTTTGCCGGAAGCAGGCTGAAATTCCTGCAGAGGGTCGCTT ACCTTAATGTTGGCATCTACCCTTTCACTTCACTCTTCCTCCTCCTTTATTGCTTCCTACCAGCCCTCTCCCTATTTGCTAACAAATTCATCGTCAATTC TCTTGATGTTAACTTCCTCACCTACCTTCTAATCATCACAGTCACAATAACCCTTCTGGCCGTCCTAGAGATCAAATGGTCAGGAATTGCATTAGAGGAA TGGTGGAGGAATGAACAATTTTGGTTAATCGGTGGGACCAGTGCCCATCTTGCCGCTGTAGTACAAGGCCTGCTGAAAGTAATTGCTGGGATAGAAATCT CCTTCACTTTGACCTCCAAATCCGCAGCAGATGAGGATGACGAATTTGCTGAGCTGTACATCATCAAGTGGACGTCGCTCATGATCCCTCCATGCACCAT CATCATTGTCAACATTGTGGCCATTGCTGTTGGTTTCTCACGGACCATCTATAGCGAGGTGCCTCAATGGAACAATCTAATAGGCGGTGCGTTCTTTAGC TTCTGGGTTCTAGTTCATCTCTACCCGTTTGCCAAAGGCTTAATGGGAAGGCGGGGGAAGACTCCCACCATTGTATTTGTTTGGTCAGCCCTAATCTCTA TATGCATTTCTCTGCTATGGGTTGCTATTAACCCCCCGGCTGGCCAAAACCAAATTGGCGGGTCTTTTCAATTGCCATCATGA
AA sequence Show only first row Show all	>Lus10002134 pacid=23181300 polypeptide=Lus10002134 locus=Lus10002134.g ID=Lus10002134.BGIv1.0 annot-version=v1.0 MANNNGRRAAASPAIHQLSNSRDFDSDIGSVEFSTYTVHIPPTPDNQPMESPQSSPPFRKPASSSSTYMYHQQVQPSSVRGAMTMTLPIPAASSFCQVPG CDAVADEFFFPCDCEFRICRDCFNDAAGDGICPGCKSPYHQDYEAAQLQVDRTLSVIKKPATVIHNDFESSDSDFLFDSSKKDYVNAAWSGSSADHDQHP NMNIPAAERKPLTRKLNIPATILGPYRALILIRMIALAMFIEWRVTNPNEEAMWLWGMSVICELWFSFSWLLDQLPKLCPVKREVDLQVLKEKFETPNPN NPTGKSDLPGVDFFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFARLWVPFCRKHNVEPRNPESYFNLKTDPYKNK VRADFVRDRRRVKREYDEFKVCVNGLPNSIRRRSDAYNTHEEIKIMKKVKERSGDGDDDEDEQIMIDRVKIPKATWMTDGTHWAGTWTTPSPDHTRGDHA SIIQVMLQAPSEEPIKGSTSDGNSMDLSEVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAVMSNGPFILNLDCDHYIYNSEALREGMCFMMDTDG DSICYVQFPQRFEGIDPSDRYANQNTVFFDVNMLALDGIQGPVYVGTGCLFRRTAIYGFEPPSAKQSKRNVDQDDADAFLIPKKFGNSSMLVDSVPTAAY QGLPLADHPSMKNGRPPGALIGPREPVNTGTIGEAVNVISCWYEDKTEWGVNVGWIYGSVTEDVVTGFRMHEKGWRSVYCMTKRDAFRGTAPINLTDRLH QVLRWATGSVEIFFSRNNALFAGSRLKFLQRVAYLNVGIYPFTSLFLLLYCFLPALSLFANKFIVNSLDVNFLTYLLIITVTITLLAVLEIKWSGIALEE WWRNEQFWLIGGTSAHLAAVVQGLLKVIAGIEISFTLTSKSAADEDDEFAELYIIKWTSLMIPPCTIIIVNIVAIAVGFSRTIYSEVPQWNNLIGGAFFS FWVLVHLYPFAKGLMGRRGKTPTIVFVWSALISICISLLWVAINPPAGQNQIGGSFQLPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10002134 [exp]	0	1
AT3G07350			Protein of unknown function (D...		Lus10002335 [exp]	1.7	0.9466
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Lus10030070 [exp]	2.6	0.9493
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008754 [exp]	6.5	0.9487
AT1G57610			Protein of unknown function (D...		Lus10034435 [exp]	7.4	0.9437
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10027755 [exp]	8.4	0.9369
AT4G15630			Uncharacterised protein family...		Lus10033971 [exp]	8.9	0.9262
AT4G21920			unknown protein		Lus10001143 [exp]	9.9	0.9421
AT2G46150			Late embryogenesis abundant (L...		Lus10007904 [exp]	12.0	0.9208
AT1G19530			unknown protein		Lus10002540 [exp]	13.3	0.9464
AT5G24890			unknown protein		Lus10009793 [exp]	14.7	0.9413

Compare expression of checked genes

Lus10002134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.