Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17165 69 / 5e-16 unknown protein AT3G03150 60 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008759 [exp] 169 / 2e-55 AT3G03150 72 / 3e-17 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G081700 [exp] 66 / 1e-14 AT5G17165 125 / 3e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002135 pacid=23181288 polypeptide=Lus10002135 locus=Lus10002135.g ID=Lus10002135.BGIv1.0 annot-version=v1.0 ATGCTGCTGGTACCTAGCTTAGCTTCTACTAATATATGTTTTGTAACAAAAAAAAACATCAACAGGCGTGGATTGGTGCATACGTCGGCCTATGAGAAGA ACATAGAGGCCGGTACGACAGGGGAGGACGATGGTATATTCCAGCAGGCGACTCAGCAGCTGAAATCCCCCAGGGAGGAAGACAGCAAGTACCACTATTG GGAGCCACACCCGCAGACTGGGGTGTTTGGCCCTGCTTCTGCTGCTTCATCGGGGGCCAACTGTACTACTACTACTACTACTACTATCACTGATGCACCA GAGGAGAAGGCCTGGTTCCGCCCTACAAGTCTTGAGGACTTGGAGAAGCCCCATCCTCTTCCTTAA
AA sequence Show only first row Show all	>Lus10002135 pacid=23181288 polypeptide=Lus10002135 locus=Lus10002135.g ID=Lus10002135.BGIv1.0 annot-version=v1.0 MLLVPSLASTNICFVTKKNINRRGLVHTSAYEKNIEAGTTGEDDGIFQQATQQLKSPREEDSKYHYWEPHPQTGVFGPASAASSGANCTTTTTTTITDAP EEKAWFRPTSLEDLEKPHPLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17165			unknown protein		Lus10002135 [exp]	0	1
AT5G01830			ARM repeat superfamily protein...		Lus10006090 [exp]	1.4	0.9361
AT5G01830			ARM repeat superfamily protein...		Lus10025244 [exp]	2.0	0.9189
AT2G20230			Tetraspanin family protein (.1...		Lus10022841 [exp]	3.0	0.8772
AT1G79160			unknown protein		Lus10031179 [exp]	3.6	0.8493
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10041799 [exp]	4.9	0.8584
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Lus10016577 [exp]	6.7	0.8572
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10029820 [exp]	7.2	0.8701
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10043325 [exp]	7.4	0.8700
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10036280 [exp]	10.4	0.8678
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	11.5	0.8498

Compare expression of checked genes

Lus10002135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.