Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008758 [exp] 633 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G082000 [exp] 393 / 2e-135 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002136 pacid=23181283 polypeptide=Lus10002136 locus=Lus10002136.g ID=Lus10002136.BGIv1.0 annot-version=v1.0 ATGGCTTCATCCTCGCACTCTCAGCCTCCGAAAATACTATTAGCTAAGCCTTCTGCAATTATCAATTCCAGTCCAGTCCTGGGCAAATTTGGACGCCCCG CCCCTGCTGCCGATGACGAACCACTGCCGTTTCCTCACTCTCGTTTACCCGCACTCAATCTACTCTCTGATTCCTGGGATTTTCACTTCGACCGATTCCT CCCCTTCTTGACGGAAAACACCAATTTCACGGTGGTTGGAGTGATTGGGCCACCTGGTGTTGGAAAATCGACCATTATGAATGAGATTTATGGCTTTGAT GGAACTTCACCCGGAATGTTGCCACCGTTTAATGTACAATCAGAGGATAGTAAAGTAATGGCAAGGCATTGTACCGTGGGCATTGAGCCAAGGATATCTG TCGAGCGGGTTATTCTTCTTGATACCCAGGTTTTCTACTTTTTTCCCTCTTTGTATTCTTCCTGTTTTCATCCTTCTATTTTAACTGAGATGATGAAACC AGATGGTTCATCAATAATCCCAGTTTTAAATGGTGAGAATCTCTCTGCTGAGTTGGCACAAGAACTTGCGTGCATCCAGGTTGGCCTGTTGAAACATGGG ATACCTGATCCATGTTCAATCAGCTCTGTGAGTAGTGGCTGTGGAGCAGAGAGGGACAACAAAGATGAAGGTTTCGGGGAAGAGTACATAGCCACTCCTA TCTTCGTGCATACAAATTTACAAGATGAAAATTGCACCCGACATGATTACTTGCAACTGAGGAAGACATTAACACAATATTTCGGTTCCTCGTCATTCAC GAGAGAGAGATATGGAAGCATGCCAAAAGTGCAGGCCCTGTATCCTGAGACTCTAGAGGCTGAGAGTGGTACGCTGCTGAAATTACATCTGGTACCCTCT AAGACAAAACATGAATCGTCAAGAGCTCAGAATGAAACTCGACTTTCTCTTCTTTGGAAACTGCGAGATGAGGTGTTATCGATGAACTGTCCATTTGCTA GGGCAGTTTCAGAGCGTGACTGGTTAAAGAATTCTGCGAAGATATGGGAGATGGTGAAGAGTTCCGGTGTCATTGTGGAGTATAGTCGAATGATGCAAAG TTCAGGGATGTTCAGAGGTAGATGA
AA sequence Show only first row Show all	>Lus10002136 pacid=23181283 polypeptide=Lus10002136 locus=Lus10002136.g ID=Lus10002136.BGIv1.0 annot-version=v1.0 MASSSHSQPPKILLAKPSAIINSSPVLGKFGRPAPAADDEPLPFPHSRLPALNLLSDSWDFHFDRFLPFLTENTNFTVVGVIGPPGVGKSTIMNEIYGFD GTSPGMLPPFNVQSEDSKVMARHCTVGIEPRISVERVILLDTQVFYFFPSLYSSCFHPSILTEMMKPDGSSIIPVLNGENLSAELAQELACIQVGLLKHG IPDPCSISSVSSGCGAERDNKDEGFGEEYIATPIFVHTNLQDENCTRHDYLQLRKTLTQYFGSSSFTRERYGSMPKVQALYPETLEAESGTLLKLHLVPS KTKHESSRAQNETRLSLLWKLRDEVLSMNCPFARAVSERDWLKNSAKIWEMVKSSGVIVEYSRMMQSSGMFRGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002136 [exp]	0	1
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	4.2	0.8798
AT2G47020			Peptide chain release factor 1...		Lus10009980 [exp]	6.8	0.8549
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	8.8	0.8509
AT3G26730			RING/U-box superfamily protein...		Lus10035163 [exp]	9.2	0.8206
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10026528 [exp]	17.7	0.8467
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10026832 [exp]	21.2	0.7895
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10032778 [exp]	21.6	0.8020
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10009796 [exp]	21.7	0.8272
AT1G19270		DA1	DA1 (.1)		Lus10010033 [exp]	22.4	0.7841
AT1G04910			O-fucosyltransferase family pr...		Lus10037830 [exp]	24.9	0.8050

Compare expression of checked genes

Lus10002136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.