Plant FIBer expression Database

Lus10002137 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G17070 191 / 2e-60 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008757
[exp]
428 / 3e-154 AT5G17070 186 / 4e-58 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G052400
[exp]
199 / 6e-64 AT5G17070 212 / 1e-68 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09184 PPP4R2 PPP4R2
Representative CDS sequence
>Lus10002137 pacid=23181280 polypeptide=Lus10002137 locus=Lus10002137.g ID=Lus10002137.BGIv1.0 annot-version=v1.0
ATGGCTTCGACGGCCGAAAACACCTCCGACCTTGCAACCACTTCGACCGGTGAGAAAGTCTCCGTACACCTTCTGGATGGAGCTTCTGTAGCTACCGTTC
CTGTTCCAGAGGCGTCCGACCATCGCGGGGATGAACCTGGGAGTGCTGATCCTGAATACGAAGCTGAAGCCGTGCTGGAACTTATTGCATCCACTGGGAA
ATTCTGGCATAACTGGGATAACTTGAAGATTATTCTATCCTTTAAGCTGAAGCAGGTGTTGTCTGAGTATCCTGAAGTAAAGATGACGAGTGAAGAGCAG
AAAGCTTCAGTAGGAGAAACATACCCAGACTTGGTAAAAAGGCTGGATGATGCTCTTCATAGCTTTGTTGATGGCCCTCCATTTACCCTGCAAAGGCTGT
GTGAGATCCTGCTGGCTGCAAGGAGCATCTATCCGAATCTCTCAAAGCTTGCTCTAGCTCTAGAAAAGAATTTATTAGTCACCTCTACTTTGACTGCAAG
CACGGATCCATGTCCACTAGTGAAGCCTAAGCAGGATGAACCTTACGATGCAAGTCTAAAGCAACAGAAGGAGCAACCATCCAACTCGGAAGAAAATGGA
GTCCAGCTGGCAGGGACGGATGGGGATGAAATAATGGCCGAGGTAGAGACTGGTATTGGTGACGAGATGACAGTTGACATGGAAGCCTTTGAAGAGACGA
AATAG
AA sequence
>Lus10002137 pacid=23181280 polypeptide=Lus10002137 locus=Lus10002137.g ID=Lus10002137.BGIv1.0 annot-version=v1.0
MASTAENTSDLATTSTGEKVSVHLLDGASVATVPVPEASDHRGDEPGSADPEYEAEAVLELIASTGKFWHNWDNLKIILSFKLKQVLSEYPEVKMTSEEQ
KASVGETYPDLVKRLDDALHSFVDGPPFTLQRLCEILLAARSIYPNLSKLALALEKNLLVTSTLTASTDPCPLVKPKQDEPYDASLKQQKEQPSNSEENG
VQLAGTDGDEIMAEVETGIGDEMTVDMEAFEETK

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G17070 unknown protein Lus10002137
[exp]
0 1
AT3G54480 SKP5, SKIP5 SKP1/ASK-interacting protein 5... Lus10039556
[exp]
6.0 0.8852
AT4G28830 S-adenosyl-L-methionine-depend... Lus10011107
[exp]
6.8 0.9110
AT3G04970 DHHC-type zinc finger family p... Lus10033823
[exp]
10.7 0.9165
AT1G19430 S-adenosyl-L-methionine-depend... Lus10032717
[exp]
13.0 0.8936
AT1G28330 DYL1, DRM1 DORMANCY-ASSOCIATED PROTEIN 1,... Lus10013997
[exp]
13.0 0.8732
AT4G24740 AME1, AFC2 FUS3-complementing gene 2 (.1.... Lus10043309
[exp]
15.6 0.9100
AT1G31480 SGR2 shoot gravitropism 2 (SGR2) (.... Lus10003520
[exp]
16.0 0.8750
AT5G05320 FAD/NAD(P)-binding oxidoreduct... Lus10034468
[exp]
17.8 0.9093
AT4G14290 alpha/beta-Hydrolases superfam... Lus10034017
[exp]
18.7 0.8800
AT5G51020 CAA33, CRL constitutive activator of AAA-... Lus10032529
[exp]
20.0 0.8952

Lus10002137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.