Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64940 547 / 0 CYP89A6 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) AT2G12190 542 / 0 CYP89A4 Cytochrome P450 superfamily protein (.1) AT1G64950 542 / 0 CYP89A5 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) AT1G64930 513 / 6e-179 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT1G64900 495 / 1e-171 CYP89A2 "cytochrome P450, family 89, subfamily A, polypeptide 2", cytochrome P450, family 89, subfamily A, polypeptide 2 (.1) AT3G03470 478 / 3e-165 CYP89A9 "cytochrome P450, family 87, subfamily A, polypeptide 9", cytochrome P450, family 87, subfamily A, polypeptide 9 (.1) AT5G61320 463 / 2e-159 CYP89A3 "cytochrome P450, family 89, subfamily A, polypeptide 3", cytochrome P450, family 89, subfamily A, polypeptide 3 (.1) AT1G11600 288 / 8e-91 CYP77B1 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) AT5G04660 287 / 1e-90 CYP77A4 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) AT5G04630 285 / 6e-90 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020360 [exp] 507 / 2e-176 AT1G64940 613 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10010229 [exp] 498 / 1e-172 AT1G64940 574 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020353 [exp] 491 / 4e-170 AT1G64940 572 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10028654 [exp] 487 / 2e-168 AT1G64940 562 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020359 [exp] 464 / 2e-159 AT1G64940 550 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10013067 [exp] 437 / 8e-149 AT1G64940 472 / 4e-163 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10034156 [exp] 303 / 2e-96 AT5G04660 679 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Lus10007658 [exp] 294 / 3e-93 AT1G11600 663 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10018351 [exp] 293 / 2e-92 AT1G11600 662 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088086 [exp] 570 / 0 AT1G64950 636 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G087950 [exp] 570 / 0 AT1G64950 642 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088154 [exp] 562 / 0 AT1G64950 639 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088018 [exp] 560 / 0 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.005G079600 [exp] 555 / 0 AT1G64940 575 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.008G099100 [exp] 536 / 0 AT1G64940 540 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076700 [exp] 535 / 0 AT1G64940 592 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076600 [exp] 534 / 0 AT1G64940 578 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.001G330501 [exp] 524 / 0 AT1G64940 569 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.015G006100 [exp] 478 / 1e-164 AT1G64940 484 / 7e-168 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10002138 pacid=23181293 polypeptide=Lus10002138 locus=Lus10002138.g ID=Lus10002138.BGIv1.0 annot-version=v1.0 ATGGAAGAGATCAGCAGCAGCAGCTGGATCATCATTACAGCCATCGCCACCTCCCTTCTTTCATCTGTAGCTCTCCTGATATTGAAAACCCGCCTCTTTC CTTCTTCCCCAACCCTCCCACCAGGGCCAACTTCCATTCCTATTCTTGGGACCTTGGTATGGATGTTAAAGAGCGGTGGCTTCTCAGACCTGGAACCCAC CCTCCGCCGTCTCCTTGCCAAATACAACTCCATTATCACCATCCGCATCTTCTCCCGCCCAGCCATCTTCATAGCATCCCACTCCCTTGCCCACCAGGCC CTCATTCAGGACGGCGCCGTTTTCGCCGATAGGCCCCCTGCTCCACCTGTCTCAAAGATCGTCTCTTCCGACCAGCATAACATCAGCTCCGCTTCCTACG GCCTCACCTGGAGGCTCCTCCGCCGCAACCTTACCTCCCAACTTCTCCATCCTTCCCGTATCAGGTCCTTCTCCGGACCTCGCTCCTCTGTCCTCCATAT CCTCCTTGGCCGCCTTCGAAACCAACAACAGGATAAAAATAACATTCGCCTCAAGGATCACCTGCACCATGCCATGTTCTGCTTGCTGGTTTTGATGTGC TTTGGCGATAAGGTTGAGGAGGGCGTGATCGAAAAGGTGGGACGAGTCCAGCGTAGGATGCTGCTAGGCTTTCGACGTTTCCAGATACTCAACCTCTGGC CTTCTCTCACGAGGATCTTGCTCCGCAATCGCTGGAAGGAGTTCCACCAGCTCCGCCGTGAGCAGCACCAGGTCTTGCTTCCTCTAATCAGAGCAAGGAG AGAGCTCAATCAGCAGCAAAATCGAATTGACAAAAAAGATGATGAGAAAGAGGAGGAAATCCGGCCTCTATGCTACGTTGATTCACTGCTGGAGCTGGAG ATCCCCGTGGTCAATGCTCAAGAGTCTAAGGACAAGCAGAAGAGGAAGCTTCAAGAGGATGAAATTCTGACTTTATGCTCGGAATTCCTGGATGCAGGAA CCGACACCACTACCACCGCCCTGGAATGGATCATGGCCAATTTAGTGAAGCACCCACATATCCAGGAGAAGCTCTTCTCAGAGATTCAAAGGGTGATGGG CTCCAGCTCCGAGGTTTCAGAGGAGGATCTGCCGAAGATGCCCTACATGAGGGCGGTGAACCTGGAAGGTTTGAGGAGACACCCGCCGGGACATTTTGTG CTGCCGCACGCGGTGACACATGACACGGTGCTGGATGGTTTCGTGATCCCCAAGAAAGCTGCTGTTAACTTTATGGTGGCCGAGATGGGCTGGGATCCCA AGGTCTGGGAGGACCCCATGGCTTTCAAGCCAGAGAGGTTCTTGGATGACGATGCAGCAGAAGGAAGGGCGCCAGAGTTTGACTTGACCGGAAGCAAAGA GATTAAGATGATGCCATTCGGAGCAGGGAGAAGAATGTGCCCTGGCTACTCCCTTGCCATGCTCCATCTGGATTACTTTGTTGCTAATCTTGTCTGGAAT TTCAAGTGGGAAGCCACTGATCATGATGACGTTGACCTCTCCGAAAAGCCAGAGTTTACCGTTGTAATGAAGCATCCCCTGGTGGTCAAATTAACCCCTC GGGTCACACCTTCCTCAGTATAG
AA sequence Show only first row Show all	>Lus10002138 pacid=23181293 polypeptide=Lus10002138 locus=Lus10002138.g ID=Lus10002138.BGIv1.0 annot-version=v1.0 MEEISSSSWIIITAIATSLLSSVALLILKTRLFPSSPTLPPGPTSIPILGTLVWMLKSGGFSDLEPTLRRLLAKYNSIITIRIFSRPAIFIASHSLAHQA LIQDGAVFADRPPAPPVSKIVSSDQHNISSASYGLTWRLLRRNLTSQLLHPSRIRSFSGPRSSVLHILLGRLRNQQQDKNNIRLKDHLHHAMFCLLVLMC FGDKVEEGVIEKVGRVQRRMLLGFRRFQILNLWPSLTRILLRNRWKEFHQLRREQHQVLLPLIRARRELNQQQNRIDKKDDEKEEEIRPLCYVDSLLELE IPVVNAQESKDKQKRKLQEDEILTLCSEFLDAGTDTTTTALEWIMANLVKHPHIQEKLFSEIQRVMGSSSEVSEEDLPKMPYMRAVNLEGLRRHPPGHFV LPHAVTHDTVLDGFVIPKKAAVNFMVAEMGWDPKVWEDPMAFKPERFLDDDAAEGRAPEFDLTGSKEIKMMPFGAGRRMCPGYSLAMLHLDYFVANLVWN FKWEATDHDDVDLSEKPEFTVVMKHPLVVKLTPRVTPSSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10002138 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025904 [exp]	1.4	0.9026
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029054 [exp]	2.2	0.8456
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10034212 [exp]	2.4	0.8426
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10037218 [exp]	5.1	0.8246
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10036178 [exp]	5.8	0.8529
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10015994 [exp]	7.3	0.8321
AT5G61820			unknown protein		Lus10042158 [exp]	7.5	0.8153
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10039005 [exp]	7.5	0.8088
AT3G18215			Protein of unknown function, D...		Lus10009010 [exp]	7.7	0.8319
AT5G43850		ATARD4	RmlC-like cupins superfamily p...		Lus10021902 [exp]	8.0	0.8472

Compare expression of checked genes

Lus10002138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.