Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54130 167 / 8e-43 AT-RSH3, RSH3, ATRSH3 RELA/SPOT homolog 3 (.1) AT3G14050 161 / 6e-41 AT-RSH2, RSH2, ATRSH2 RELA-SPOT HOMOLOG 2, RELA/SPOT homolog 2 (.1) AT4G02260 151 / 1e-37 AT-RSH1, RSH1, ATRSH1 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) AT3G17470 65 / 2e-10 ATCRSH Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008756 [exp] 445 / 7e-151 AT4G02260 47 / 1e-05 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10008755 [exp] 438 / 5e-147 AT1G54130 72 / 1e-13 RELA/SPOT homolog 3 (.1) Lus10022102 [exp] 158 / 1e-40 AT1G54130 801 / 0.0 RELA/SPOT homolog 3 (.1) Lus10001862 [exp] 159 / 4e-40 AT1G54130 867 / 0.0 RELA/SPOT homolog 3 (.1) Lus10015656 [exp] 158 / 7e-40 AT1G54130 895 / 0.0 RELA/SPOT homolog 3 (.1) Lus10037672 [exp] 156 / 3e-39 AT1G54130 891 / 0.0 RELA/SPOT homolog 3 (.1) Lus10003599 [exp] 138 / 4e-34 AT4G02260 643 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10028191 [exp] 69 / 1e-11 AT3G17470 671 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10042894 [exp] 67 / 4e-11 AT3G17470 350 / 6e-114 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G089000 [exp] 1147 / 0 AT1G54130 164 / 8e-42 RELA/SPOT homolog 3 (.1) Potri.001G168200 [exp] 153 / 2e-38 AT1G54130 953 / 0.0 RELA/SPOT homolog 3 (.1) Potri.003G066000 [exp] 152 / 8e-38 AT1G54130 901 / 0.0 RELA/SPOT homolog 3 (.1) Potri.014G126700 [exp] 140 / 4e-34 AT4G02260 1305 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.010G002400 [exp] 71 / 3e-12 AT3G17470 688 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF04607 [flax] [poplar] RelA_SpoT Region found in RelA / SpoT proteins CL0072 [flax] [poplar] Ubiquitin PF02824 [flax] [poplar] TGS TGS domain CL0237 [flax] [poplar] HD_PDEase PF01966 [flax] [poplar] HD HD domain
Representative CDS sequence Show only first row Show all	>Lus10002139 pacid=23181302 polypeptide=Lus10002139 locus=Lus10002139.g ID=Lus10002139.BGIv1.0 annot-version=v1.0 ATGATGTTAGTACAGAAAAGCTGGACGCCGCTGTTGCTCCTCCACCATCACCATCGCTGCTTCTGCTACTACAGCCTTGTCATCGCCCACTCCCCTTCTT ATTTGCTCCCTACGAGAAGGAGGACGCGGAGGCTCTCCTCTGTCTCTTCCTCCCTCGTCGCCTCTGCTCCCAACCTCATCGCCGCCGCTGCCGCCTCCTC TTCCTCCACTGCCTCCCTCCATGGCGCCGTCTCCTCTGCCATCACTCAAGTTGCTCTCACCGCCGTCGCCATCGCCTCCGGAGCTTGCCTTTCCACTAAA GTGGACTTCTTGTGGCCTAAGCTTCAAGACGTCCCCTTTGATTCTTTCTCGGTGGAAGGAGTGGATGTGAGTGGTTGTTCCATCTTCAGCGATTCCCAGG TGCTAAAGGCTATTGCTTTTGCTAAAACTGCTCATCATGGTCAGTTCCGAAGAACTGGGGATCCCTACTTGACTCACTGCATTCACACTGCTAGGATTTT AGCCATGTTGGTCCCTCCTGCAGGCCAACGGGCCACAGACACGGTCATTGCTGGCATTCTCCATGATGTCGTGGATGACACCAATGAAACCCTGAATAGG ATTGAGCAAGAGTTTGGTATCGAAGTTGCCAGGTTGGTTGCTGGCGTTTCCAGATTAAGCTACATTAATCAGCTGCTAAGGAGACACCGCCGTGTAAATG TTAACCAGCCTACTCTTGGCCAGGATGAGGCAAACAATTTGCGAGTTATGCTCTTGGGAATGGTTGATGATCCACGGGTGGTGCTCATCAAGCTTGCAGA CCGCCTTCACAATATGAGAACCATTTATGCTCTCCCACCATCAAAAGCTCAAGCTGTGGCACAAGAGACATTACTTGTTTGGTGCTCGCTCGCTTCTAGG TTGGGTTTATGGGCATTGCAAGCAGAACTGGAAGATCTATGCTTCGCAGTTCTTCAGCCACAATTGTTCCGCAAGATGCGGGGTGATTTGGGTTCTATGT GGACTTCTAATGGCAGAGACCTGTTTACAAGCAGAGCTACAAAAGGCGGTGTGCTGATTTCTGGTGAGGAAAACTCAATTTTGGTAGGAGGAAGGTTTGG GGTGGAGGAGGAAGACGATGTCCCATCTATGAAGGATCTTTTAGAAGCTGTGGTACCCTTTGATATCTTGTCAGATCGAAGAAAACGGACCATGTTTATT GAAAGCTTGAAGAGCACAAATGAAGTTATTAAAAGACCAAAAGTTGTGCTGGATGCTGGAATTGCCTTAGCATCTCTGGTCACTTGTGAGGAAGCACTTG AAAGGGAGCTATTCATCTCAACCTCTTACGTTCCAGGCATGGAAGTCTCCTTATCTAGTCGGTTGAAGAGTTTGTATAGCATTTATAGCAAGATGAAAAG AAAGGAGGTCAGCATTAACAAAATATATGACTCCCGTGCATTAAGGGTTGTAGTTGGAGACAAAAAGGGAACTTTGAAGGGACCTGCAATTCATTGTTGC TACAGTCTGCTCAACACAGTCCATAGGCTCTGGACTCCAGTTGATGGTGAATTTGATGATTACATTGTTAACCCAAAGCCTAGCGGCTATCAGTCCCTGC ATACCGCAGTGCAAGGCCCTGATGGTGCACCTTTGGAGGTTCAAATAAGAACACAGAAAATGCATGATTATGCTGAGCATGGGCTTGCTGCACACTGGCT ATATAAAGAAGCCGAAAAAAAGTTGCCCTCTTTAAGCAACATGGATGAATCTGAAGTGGAAGCAAGTTCTAACTTCTCCAAAGACACTGAAGACCACAAC TCTATGAACGAGGATCAATTTCAAAAGTGCAGATTCCTTAGGGTGGGGCATCCGGTCCTTAGAGTAGAAGGGAGCCACCTGCTTGCTGCTGTTATAATTA GGATAGACGAGGGTGGGAAAGAACTGCTAGTTGCTGTGAGCTCTGGTATGGCTGCACCCGAGGCAGTAGCTGACAGAAAATCTTCGTGTCAAGTAAAGCG ATGGGAATCCTATGCAAGACTATACAAGAAGGTGACGGAGGAGTGGTGGTGTGAGCCAGGACATGGAGATTTGTGCACTTGCCTTGAGAAGTTTATTCTT TGCCGGGATGGCATGTACCACAAGCAAGATCAATTCGAGAGGATGCTACCAACGTTCATCCAGGTGATTGAACTGACGGAGGAAGAGGAAAGTGAGTACT GGGAAGTTGTGGCAGCGGTGTTTGAAGGAAAGGCTGTCGATGACATCATGGCTGGGAAGGCGACTGAATCATCAACATCGTCATCATCATCATCCACTCC AATGGAAGCGAGCATCAATAACAAGGTACGGCTTCTGAGAGCGATGCTGGGGTGGGAGGAGCAGTTGCGCAGCGGCAGCAACAGCTACAAAAGCAGCAGC GATAGTATGTCTTTGTCATCATCATCATCAATGGCGCTGGGGGAAGTGGTGGTGATATGTTGGCCAAATGGGGATATAATGAGGTTAACCAACGGAAGTA CTGCAGGAGATGCGGCTCAGAGAGTTGGACTGGAAGGGAAAGTGGTGGCAGTGAACGGTCATCTGGTCCTTCCAAGCACCCCCCTCAAAGACGGAGATGT AGTTGAGGTCCGGCATTGA
AA sequence Show only first row Show all	>Lus10002139 pacid=23181302 polypeptide=Lus10002139 locus=Lus10002139.g ID=Lus10002139.BGIv1.0 annot-version=v1.0 MMLVQKSWTPLLLLHHHHRCFCYYSLVIAHSPSYLLPTRRRTRRLSSVSSSLVASAPNLIAAAAASSSSTASLHGAVSSAITQVALTAVAIASGACLSTK VDFLWPKLQDVPFDSFSVEGVDVSGCSIFSDSQVLKAIAFAKTAHHGQFRRTGDPYLTHCIHTARILAMLVPPAGQRATDTVIAGILHDVVDDTNETLNR IEQEFGIEVARLVAGVSRLSYINQLLRRHRRVNVNQPTLGQDEANNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPSKAQAVAQETLLVWCSLASR LGLWALQAELEDLCFAVLQPQLFRKMRGDLGSMWTSNGRDLFTSRATKGGVLISGEENSILVGGRFGVEEEDDVPSMKDLLEAVVPFDILSDRRKRTMFI ESLKSTNEVIKRPKVVLDAGIALASLVTCEEALERELFISTSYVPGMEVSLSSRLKSLYSIYSKMKRKEVSINKIYDSRALRVVVGDKKGTLKGPAIHCC YSLLNTVHRLWTPVDGEFDDYIVNPKPSGYQSLHTAVQGPDGAPLEVQIRTQKMHDYAEHGLAAHWLYKEAEKKLPSLSNMDESEVEASSNFSKDTEDHN SMNEDQFQKCRFLRVGHPVLRVEGSHLLAAVIIRIDEGGKELLVAVSSGMAAPEAVADRKSSCQVKRWESYARLYKKVTEEWWCEPGHGDLCTCLEKFIL CRDGMYHKQDQFERMLPTFIQVIELTEEEESEYWEVVAAVFEGKAVDDIMAGKATESSTSSSSSSTPMEASINNKVRLLRAMLGWEEQLRSGSNSYKSSS DSMSLSSSSSMALGEVVVICWPNGDIMRLTNGSTAGDAAQRVGLEGKVVAVNGHLVLPSTPLKDGDVVEVRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	0	1
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Lus10025698 [exp]	1.4	0.8838
AT1G71530			Protein kinase superfamily pro...		Lus10002469 [exp]	3.0	0.8547
AT4G33470		HDA14, ATHDA14	histone deacetylase 14 (.1)		Lus10010889 [exp]	3.5	0.8690
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013606 [exp]	3.7	0.8608
AT3G47490			HNH endonuclease (.1.2.3)		Lus10034462 [exp]	5.1	0.8504
AT2G12400			unknown protein		Lus10008813 [exp]	5.7	0.8909
AT3G18770			Autophagy-related protein 13 (...		Lus10005812 [exp]	6.0	0.8432
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10035099 [exp]	8.9	0.8447
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003623 [exp]	9.2	0.8266
AT5G01950			Leucine-rich repeat protein ki...		Lus10004061 [exp]	10.6	0.7834

Compare expression of checked genes

Lus10002139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.