Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18270 1111 / 0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) AT4G29120 103 / 1e-23 6-phosphogluconate dehydrogenase family protein (.1) AT4G20930 100 / 1e-22 6-phosphogluconate dehydrogenase family protein (.1) AT1G71170 94 / 8e-21 6-phosphogluconate dehydrogenase family protein (.1) AT1G71180 92 / 5e-20 6-phosphogluconate dehydrogenase family protein (.1) AT1G17650 90 / 5e-19 GR2, GLYR2 glyoxylate reductase 2 (.1) AT3G25530 83 / 4e-17 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008753 [exp] 1098 / 0 AT1G18270 853 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Lus10023258 [exp] 107 / 5e-25 AT4G20930 479 / 4e-171 6-phosphogluconate dehydrogenase family protein (.1) Lus10001349 [exp] 101 / 3e-23 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1) Lus10012950 [exp] 89 / 3e-19 AT4G29120 456 / 3e-163 6-phosphogluconate dehydrogenase family protein (.1) Lus10037629 [exp] 84 / 3e-17 AT1G17650 486 / 9e-174 glyoxylate reductase 2 (.1) Lus10038545 [exp] 83 / 9e-17 AT4G20930 451 / 3e-160 6-phosphogluconate dehydrogenase family protein (.1) Lus10015612 [exp] 84 / 2e-16 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10012301 [exp] 79 / 9e-16 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10016077 [exp] 75 / 2e-13 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G037000 [exp] 1193 / 0 AT1G18270 1931 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Potri.001G211500 [exp] 103 / 5e-24 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.018G088000 [exp] 102 / 4e-23 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.001G465600 [exp] 98 / 7e-22 AT4G20930 507 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.014G197900 [exp] 89 / 3e-19 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.003G040800 [exp] 84 / 6e-17 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03446 [flax] [poplar] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10002140 pacid=23181289 polypeptide=Lus10002140 locus=Lus10002140.g ID=Lus10002140.BGIv1.0 annot-version=v1.0 ATGGCTGAAGACGACGCTGCTGTAATTGCTAGTAAAACCCAAATGGTGATTGACCTTCTCCGAGGAATTCATCTCGTTGCTTCCATGGAGGCAGTTGCTC TTGGTTCTCAGGCTGGGATCCATCCTTGGATTGTCTACGACATTATATCCCATGCTGCTGGTAACTCATGGGTTTTCGAGAATCATATTCCTCAGCTGCT GAAAGCTGACATCAAGACTGATTTTTTGAGCAATTTGCTCCTGAACTTAAGAGGTGTGTTGGACATGGCCAAGTCACTTACATTTCCTCTTCCACTTTTG GCTGTTGCTCATAGACAGCTTATTATTGCATCCTCACATTGTTCTGGCGTGGGGGGTGATGTAACTGTTCCTCTGATTGAGGCTTGGGAGAAACTGTTGA GACTTAATATTCAAGATGCAGCTAATGTGGAACTGTACAACCCTGAGCAATTGGCCCTACAAGTTACTGCCAAATCTTCTGTTGTAAAGCGTATTGGTTT TATTGGCCTTGGAGCAATGGGTTTTGGGATGGCATCTCACCTGCTGAAGTCGGGTTTCTGTGTCCTTGGATATGATGTATATAAGCCTACTGTAGCTAGA TTTGTTGATGAAGGAGGTTTAATTGGTACATCTCCTGAAGATGTATCTGACGATGTTGATGTGCTAATAGTCATGGTTGCAAATGAAGCTCAAGCTGATA GTGTTCTGTATGGCGAGTTCGGTGCTGTTAAGGCACTTCCATCTGGAGCATCTGTCATCCTTTCATCTACCGTATCTCCTGCCTTCGTGATCAATCTGGA ACAGCGTTTGATAAATGAAGGCAAAGATTTAAAGTTGGTGGATGCTCCAGTTTCTGGAGGTGTTAAGAGAGCAGCTGATGGAACACTTACGATAATGGCC TCGGGTACCAACGAAGCTCTTGAGTGTGTTGGTTCTGTTCTCTCAGCTATGAGTGAGAAGCTTTATGTCATTCAAGGAGGCTGTGGTGCTGGAAGTGGCA CAAAAATGGTTAATCAGTTGCTGGCTGGAGTGCATATAGCTTCAGCAGCTGAAGCAATGGCTTTTGGAGCTCGACTAGGCCTTCATACAAGGAAACTATT TCACTCCATTGCAGACAGTGAAGCAACATCTTGGTTGGTAGCCAGCACCTTGTATCCCTGGATGATTTTTGGAGTGATGCTTGAGAATCGGGTTCCACAC ATGTTGGACAATGATTATACCCCGTATTCTGCACTAGACATCTTTGTGAAGGATCTGGGAATTGTTAGCCATGAATGTTCGTCCCGCAACCTTCCACTTC ACATCGCAACTCAGGCGCATCAGCTCTTCTTGGCAGGCTCTGCAGCTGGTTGGGGTCGGCAAGATGATGCTGGAGTAGTCAGGGTTTATGAAGTGCTCAC AGGAGTAAGGGTTGAAGGAAAGCTTCCAATTCTTAAGAAAGATGTTCTGCTGCAATCACTCCCACCTGAATGGCCCTTAGATCCCATTGATGATATACAT AGACTCAATCAGAGCAGTTCGAAAACATTGGTGGTACTAGACGATGATCCTACTGGAACTCAAACTGTTCATGATATTGAAGTATTAACAGAATGGAGCA CTGAGGCACTTGTTGATCAATTTAGGAAAAGGCCATCCTGTTTTTTCATTTTGACTAACTCTAGATCTTTGAGTTCTGACAAGGCCAGCTCATTGATAAA GGCTATATGTACCAACCTAGGTATCGCAGCTAGAACAGTTGAGAATGTTGACTATACAATAGTCCTGAGAGGTGATTCAACTTTACGTGGTCATTTTCCT GAGGAAGCCGATGCAGCTGTTTCAGTGATTGGTAAGGTTGATGCATGGATCATCTGCCCATTTTTCCTTCAAGGCGGCCGCTATACAATCAATGATATAC ACTATGTTGCAGATTCTGATTGGCTTGTTCCTGCTGGGGATACAGAGTTCTCGAAGGATGCTTCCTTTGGATATAAGTCTTCAAACCTTTGCGAGTGGGT TGAGGAAAAAACTATGGGGCGAATTTCAGCCAGTGATGTTACCTCTATTTCTATTCAACTACTGAGGAAAGGTGGGCCTGATGCTGTTTGTGAACTCCTC TGTGGGCTACCTAAGGTGGTATTGGGGTCCACATGTATAGTTAATGCAGCAAGTGAAAGAGACGTGGCCGTGTTTTCTTGTGCAATGATCCAGGCGGAGT TGAAGGGCAAGTCTTTCTTGTGCCGCACAGCTGCAAGTTTTGTGTCTTCTTGTATTGGAATCATTCCAAAAGCTCCGATACTTCCAAAAGATGTTGGAAT TGACAAACAGAGAGAGGGGGCACTGATAGTTATGGGGTCTTATGTACCAAAGACAACAAAACAGGTTGAACATTAA
AA sequence Show only first row Show all	>Lus10002140 pacid=23181289 polypeptide=Lus10002140 locus=Lus10002140.g ID=Lus10002140.BGIv1.0 annot-version=v1.0 MAEDDAAVIASKTQMVIDLLRGIHLVASMEAVALGSQAGIHPWIVYDIISHAAGNSWVFENHIPQLLKADIKTDFLSNLLLNLRGVLDMAKSLTFPLPLL AVAHRQLIIASSHCSGVGGDVTVPLIEAWEKLLRLNIQDAANVELYNPEQLALQVTAKSSVVKRIGFIGLGAMGFGMASHLLKSGFCVLGYDVYKPTVAR FVDEGGLIGTSPEDVSDDVDVLIVMVANEAQADSVLYGEFGAVKALPSGASVILSSTVSPAFVINLEQRLINEGKDLKLVDAPVSGGVKRAADGTLTIMA SGTNEALECVGSVLSAMSEKLYVIQGGCGAGSGTKMVNQLLAGVHIASAAEAMAFGARLGLHTRKLFHSIADSEATSWLVASTLYPWMIFGVMLENRVPH MLDNDYTPYSALDIFVKDLGIVSHECSSRNLPLHIATQAHQLFLAGSAAGWGRQDDAGVVRVYEVLTGVRVEGKLPILKKDVLLQSLPPEWPLDPIDDIH RLNQSSSKTLVVLDDDPTGTQTVHDIEVLTEWSTEALVDQFRKRPSCFFILTNSRSLSSDKASSLIKAICTNLGIAARTVENVDYTIVLRGDSTLRGHFP EEADAAVSVIGKVDAWIICPFFLQGGRYTINDIHYVADSDWLVPAGDTEFSKDASFGYKSSNLCEWVEEKTMGRISASDVTSISIQLLRKGGPDAVCELL CGLPKVVLGSTCIVNAASERDVAVFSCAMIQAELKGKSFLCRTAASFVSSCIGIIPKAPILPKDVGIDKQREGALIVMGSYVPKTTKQVEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18270			ketose-bisphosphate aldolase c...		Lus10002140 [exp]	0	1
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10019848 [exp]	2.0	0.9724
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008753 [exp]	2.4	0.9627
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10012990 [exp]	2.4	0.9602
AT2G22730			Major facilitator superfamily ...		Lus10003528 [exp]	3.5	0.9516
AT5G06560			Protein of unknown function, D...		Lus10016203 [exp]	6.0	0.9373
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10006501 [exp]	7.5	0.9144
AT5G57655			xylose isomerase family protei...		Lus10006983 [exp]	8.5	0.9587
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10022282 [exp]	8.7	0.9569
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10006009 [exp]	9.0	0.9476
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10023989 [exp]	12.7	0.9324

Compare expression of checked genes

Lus10002140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.