Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53140 1169 / 0 DRP5A Dynamin related protein 5A (.1) AT4G12840 403 / 6e-131 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT4G18530 367 / 2e-117 Protein of unknown function (DUF707) (.1) AT1G11170 319 / 9e-99 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G61240 304 / 3e-93 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT1G08040 250 / 4e-74 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G67850 250 / 1e-73 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT2G28310 248 / 2e-73 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT1G13000 243 / 3e-71 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G27470 242 / 5e-71 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008749 [exp] 693 / 0 AT1G53140 562 / 0.0 Dynamin related protein 5A (.1) Lus10008748 [exp] 386 / 2e-126 AT4G12840 294 / 7e-99 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10006728 [exp] 322 / 4e-100 AT1G61240 533 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10041107 [exp] 318 / 3e-99 AT4G12840 416 / 7e-145 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10018456 [exp] 316 / 9e-98 AT1G61240 504 / 1e-178 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10036434 [exp] 311 / 6e-96 AT4G12840 402 / 9e-139 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10038303 [exp] 308 / 1e-94 AT1G61240 507 / 2e-179 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10011228 [exp] 301 / 5e-90 AT1G61240 507 / 4e-177 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10000024 [exp] 283 / 2e-89 AT4G12840 211 / 2e-68 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G118500 [exp] 1240 / 0 AT1G53140 1263 / 0.0 Dynamin related protein 5A (.1) Potri.014G175800 [exp] 408 / 2e-133 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.004G227700 [exp] 356 / 3e-113 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1) Potri.003G003100 [exp] 350 / 4e-111 AT4G18530 480 / 4e-170 Protein of unknown function (DUF707) (.1) Potri.019G053000 [exp] 348 / 1e-110 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.004G036800 [exp] 323 / 1e-100 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.011G045300 [exp] 323 / 1e-100 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.008G185600 [exp] 247 / 7e-73 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.017G065200 [exp] 246 / 2e-72 AT3G27470 605 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.010G047200 [exp] 244 / 2e-71 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family CL0023 [flax] [poplar] PF05212 [flax] [poplar] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Lus10002141 pacid=23181285 polypeptide=Lus10002141 locus=Lus10002141.g ID=Lus10002141.BGIv1.0 annot-version=v1.0 ATGGCGACGGCCAGCAACCTATCAACTCCGTCCAAGACTCCAAACTCCAGGAAACATGTTTCTCAGAACAAATCCTCTTCCTCATCTTCGTCTTCAAGCT CTAGATTCGAAGTCTACAACCGATTGCAAGCGGCAGCGGTAGCTTTTGGCGAGAAACTCCCTATTCCAGAGATTGTCGCCATTGGCGGTCAATCTGATGG CAAAAGTTCCCTGCTCGAAGCCCTTCTCGGTTTCCGTTTCAATGTCAGGGAGGTCGAGATGGGAACCCGCAGGCCTCTTATCCTCCAGATGGTCCACGAT CCCACTGCTATTGAGCCGCGTTGCCGTTTTCAGGAAGAGGATTCTGAGGAGTACGGCAATCCTGTTCTTTCAGGAACTGCAATTGCAGACGTTATAAAGT CTCGGACGGAGGCACTTTTGAAGAGGACTGACAGTGCGGTTTCTGCCCAGCCACTTGTGATGAGGGCTGAATATGCACATTGTCCCAATCTCACCATCAT TGATACTCCGGGCTTTGTCCTTAAGGCGAAGAAGGGAGAACCAGAGAACACACCTGATGAAATTCTCTCCATGGTGAAGTCGCTCGCTAGTCCTCCTAAT CGGATCATCTTGTTCCTTCAACAAAGTAGTGTCGAATGGTGTTCATCACTATGGTTGGATGCAATTCGGGAGATTGATCCCACTTTCAGAAGAACCATAA TTGTTGTTTCCAAATTCGACAATCGACTCAAGGAGTTTACTGACCGTTGGGAAGTCGACCGGTACTTAAGCGCAAGTGGATACCTTGGAGACAATTCTCG CCCATACTATGTTGCCCTTCCCAAGGATAAACATGCAAGCTCAAATGATGAATTCCGCAGGCAAATATCTCAGGTGGACTCTGAAATCCTGCGCCATTTG CGTGATGGTATCAATGGCGGGTTTGACGAAGAAAAGTTTGGGACGCATGTTGGCTTCGGTAGTCTAAGGGAATTTTTGGAGTCGGAGCTTCAAAAGAGAT ACAAAGAAGCAGCTCCTGCTACACTAGCTTTGCTTGACCAGCGGTGTAGTGAAGTTGGCACAGAGCTGGCTAGAATGGACTCAAAATTACAGGCTACATC TGATGTTGCTCATCTTCGCAGATCTGCCATGTTGTATGCAGCTTCTCTTAGCAATCATTTGAGAGCTTTGATTGACGGAGCGGCAGATCCTGCCCCCGAG CAGTGGGGCAAAACAACACAAGAAGAACAGTCGCAAAGTGGCCTTGGTGGTTGGCCTGGTATAGCAGTTAGTATAAGACCTCCCAATGCTTCTCTCAAGC TTTATGGAGGAGCAGCTTTTGAAAGAGTGATGCATGAATTCAGGTGTGCAGCATATTCCATTGAGTGCCCTCCAGTCTCGAGAGAGAAGGTAGCTAACAT ATTATTAGCTCATGCTGGGCGCGGTGGGAACAAAGGTGTCATAGAAGCTTCAGCAGAAATTGCTCGTGCAGCTGCTCGCTCATGGCTTGCTCCCTTACTT GACACAGCTTGCGATCGTTTGGCATTTGTTATGAGGAATCTCTTTGATATCGCCCTTGAGAGAAACCATTTTCGTGAACTAGAGTATGGAAAGAAAAACG GAAATATGGAAGGTTATATTGGTTTTCATGCTGCTCTGAGGCGAGCTTATAACCAATTCATAAAGGATCTTACTCAGCAGAGCAAGCAACTGATAAGGCA TCACCTTGACTCGGTAACAAGTCCGTATTCTGATGTTTGTTATGAGAGTGACTTTCATGGGGGCTATGGTTCAAGTATGACTTTCAAATCCAAGCAAACC TCCATGGGTCCATTTTGTTTGGAGCTGTCAGGTGGTGGGGCCTCGTGCCATGATGAAACGATGAGCGATCAAGAGAACATGCTACCAGAAAAGAATGCAC ACCAAATTACCCCAGGAAAAGGTGGTGTTGAAACGAGAGAAGCTCTGAAAGAAAGCCACATGACTGTGCCTGAGACTCCTTCTCCTGATCAGCCATGTGA AATTGTGTATGGTGCCATGAAGAAGGAAAACGGAAGTTACGTGGAAATTGGGGCAAAAAAGAGAGTTTCAAGGATGACGGGAAATATGAGAAACCATGAG CATCTGAAAACTCAAAATGGCGGATTTCTTGGATTTGGGAATGTGGATAGCGGGATCAGATCGGGTTCAGCGTACTCAGATATTTGCTCTTATGCTGCGC AACATTTTGCACGAATACGTGAAGTTCTACTTGAGCGGAGCGTGACTTCAACTTTAAACTCTGGGTTTTTGACTCCTTGCCGCGACGAGCTGGTAGTGAC ACTTGGACTGGAGTTGTTTGCGGTAACAGATGACAAGTTCAAGGAGATGTTTGTTGCACCAGGCGCTGTTGAAAATGAAGGGAAACCTTATGGAAGCCAG ACACTACCTAAGGGCATCATTTCTGCAACTTCTGACTTGGAAATGCGATCCTTATGGGGCAACATTCATGAGAAGTCAAACACAGCAAAGAACTTACTGG CAATGGCAGTTGGAATAAAGCAGCTTGGGAGCGTCCATAAAATTGTGCAGAAGTTTCCGGCTGGTGACTTTGCGGTGATGCTTTTCCATTATGATGGAAA TGTGGACGAATGGAAAGGCTTAGATTGGAGCGACCGTGCTATACATATCTCTGCTATCAATCAAACTAAGTGGTGGTTTGCAAAACGTTTCTTACATCCT GATATCATTTCTGAGTATGCTTATATCTTCTTGTGGGATGAAGACCTTGGAGTTGACAACTTTGATGCCCAAAGATATCTTTCAATTGTAAAAGCCGAAG GTCTCGAGATCTCACAGCCAGCACTGGATCCTGACAAGTCAGACGTGCATCATCCTCTAACTCAGAGAAACAATGCAGTAAATGTGCACAGAAGGACATA CCAAAAGATAGGAAGCAGAACGTGCAACGACAACAGCACAGGTCCACCATGCACAGGGTTTGTGGAAATGATGGCTCCTGTTTTCTCAAAGGCATCTTGG CGTTGTGTATGGCATATCTTTCAGGGTGATCGGACCAGGAACATTGGCATCGTTGATTCCGAGTACGTTGTCCATGAAGGTCTTCCTACTCTTGGTGGTT CTGCCTCGGACAAGGTCCGAAATCGGTCGTATGTTGAGCTGGAGCTGTTCAAAAATAGATGGAAAAATGCTGCAAGGAAAGATTCCTGTTGGGTTGATCC CTATCAATAA
AA sequence Show only first row Show all	>Lus10002141 pacid=23181285 polypeptide=Lus10002141 locus=Lus10002141.g ID=Lus10002141.BGIv1.0 annot-version=v1.0 MATASNLSTPSKTPNSRKHVSQNKSSSSSSSSSSRFEVYNRLQAAAVAFGEKLPIPEIVAIGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHD PTAIEPRCRFQEEDSEEYGNPVLSGTAIADVIKSRTEALLKRTDSAVSAQPLVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPN RIILFLQQSSVEWCSSLWLDAIREIDPTFRRTIIVVSKFDNRLKEFTDRWEVDRYLSASGYLGDNSRPYYVALPKDKHASSNDEFRRQISQVDSEILRHL RDGINGGFDEEKFGTHVGFGSLREFLESELQKRYKEAAPATLALLDQRCSEVGTELARMDSKLQATSDVAHLRRSAMLYAASLSNHLRALIDGAADPAPE QWGKTTQEEQSQSGLGGWPGIAVSIRPPNASLKLYGGAAFERVMHEFRCAAYSIECPPVSREKVANILLAHAGRGGNKGVIEASAEIARAAARSWLAPLL DTACDRLAFVMRNLFDIALERNHFRELEYGKKNGNMEGYIGFHAALRRAYNQFIKDLTQQSKQLIRHHLDSVTSPYSDVCYESDFHGGYGSSMTFKSKQT SMGPFCLELSGGGASCHDETMSDQENMLPEKNAHQITPGKGGVETREALKESHMTVPETPSPDQPCEIVYGAMKKENGSYVEIGAKKRVSRMTGNMRNHE HLKTQNGGFLGFGNVDSGIRSGSAYSDICSYAAQHFARIREVLLERSVTSTLNSGFLTPCRDELVVTLGLELFAVTDDKFKEMFVAPGAVENEGKPYGSQ TLPKGIISATSDLEMRSLWGNIHEKSNTAKNLLAMAVGIKQLGSVHKIVQKFPAGDFAVMLFHYDGNVDEWKGLDWSDRAIHISAINQTKWWFAKRFLHP DIISEYAYIFLWDEDLGVDNFDAQRYLSIVKAEGLEISQPALDPDKSDVHHPLTQRNNAVNVHRRTYQKIGSRTCNDNSTGPPCTGFVEMMAPVFSKASW RCVWHIFQGDRTRNIGIVDSEYVVHEGLPTLGGSASDKVRNRSYVELELFKNRWKNAARKDSCWVDPYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Lus10002141 [exp]	0	1
AT3G54750			unknown protein		Lus10016201 [exp]	2.0	0.9439
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10011687 [exp]	2.4	0.9464
AT5G17160			unknown protein		Lus10038036 [exp]	10.4	0.9353
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10009366 [exp]	12.6	0.9256
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10007629 [exp]	13.2	0.9248
AT2G36200			P-loop containing nucleoside t...		Lus10014216 [exp]	13.4	0.9368
AT4G15830			ARM repeat superfamily protein...		Lus10034168 [exp]	18.7	0.9167
AT3G44050			P-loop containing nucleoside t...		Lus10008438 [exp]	20.1	0.9247
AT5G52910		ATIM	timeless family protein (.1)		Lus10038831 [exp]	22.3	0.9242
AT5G60930			P-loop containing nucleoside t...		Lus10000392 [exp]	25.6	0.9096

Compare expression of checked genes

Lus10002141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.