Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12830 499 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 147 / 5e-41 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 58 / 4e-09 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 55 / 5e-08 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G15960 51 / 6e-07 alpha/beta-Hydrolases superfamily protein (.1) AT4G24160 48 / 6e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G05600 47 / 2e-05 alpha/beta-Hydrolases superfamily protein (.1) AT1G80280 46 / 5e-05 alpha/beta-Hydrolases superfamily protein (.1) AT1G64670 45 / 8e-05 CED1, BDG1 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1, BODYGUARD1, alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 44 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008747 [exp] 465 / 1e-161 AT4G12830 326 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1) Lus10035875 [exp] 156 / 8e-44 AT1G52510 550 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025787 [exp] 154 / 4e-43 AT1G52510 543 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025172 [exp] 60 / 2e-09 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10011204 [exp] 53 / 2e-07 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10024310 [exp] 50 / 1e-06 AT4G24160 663 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028315 [exp] 47 / 2e-05 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10003969 [exp] 47 / 2e-05 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041763 [exp] 46 / 3e-05 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175700 [exp] 570 / 0 AT4G12830 545 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G201500 [exp] 148 / 1e-40 AT1G52510 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G219700 [exp] 64 / 7e-11 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G027300 [exp] 59 / 2e-09 AT4G24160 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G063900 [exp] 56 / 2e-08 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G235200 [exp] 51 / 9e-07 AT4G24160 645 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.013G021500 [exp] 48 / 9e-06 AT1G54990 467 / 6e-162 REDUCED ROOT GRAVITROPISM 1, REDUCED ROOT GRAVITROPISM, AUXIN RESISTANT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 45 / 7e-05 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 45 / 8e-05 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G010700 [exp] 44 / 0.0001 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002142 pacid=23181294 polypeptide=Lus10002142 locus=Lus10002142.g ID=Lus10002142.BGIv1.0 annot-version=v1.0 ATGGGGATGGCAGTTCAGGCACAGCAAACCTTTTGGCGCCACCGCTTTCGCAACATCAAATCCCATGATGTCGTTCAAGCTCATCCTCTATTATCCTTGC GGCCGAGTTCCACGAGGAAATCTACTAATTTCTCTCGTGCAGCCAGCGGGAATGATGATTACTATCTCATAGATGCAGAAGAGTCTGCTGGAGATGGCTT CTCCTTCAGTGGAGGAAAGTATTCCGGCGAGCCAAACCCATCCGATGAATGGTTCAAGCAAGGAAAAATGGTGAAAGCTCATCCTGTGTTTGGTACTAAG GAAAAAGCCCAAGATCCTATTTTTGGACTAAAAATGGGTTCTGCTTCTCAAACATCCGATGACGTTTTCAGATGGTTCTGCGTGGAGAGTGGGAATGCTG ATAATCCAACAGTTGTTCTGGTTCATGGTTTCCCTTCTCAGGCATATTCTTATCGCAAAGTGCTTCCTGTGCTCTCCAAAAATTATCATCCAGTTACTTT TGATTGGCTTGGGTTTGGATTTTCTGATAAGCCTCAACCAAAATATGGGTTTGACTACACTTTGGATGAATATGAATCGTCTTTGGAGTCCTTGATTAAT GAAATTGGACCAACTAGTAAGAAGATCTCACTTGTTGTGCAGGGATACTTCTGTCCAGTTGCTGTGAAATATGCAAGCAGTCACCAGGAAAAGCTTAGTA GTTTGATACTTCTCAATCCTCCTCTAACAGCAGCACATGTCAACCTTCCATCAACCTTGTCTATCTTCAGCAACTTCTTGCTGGGAGAAATCTTCTCACA GGACCCGCTGAGGGCAAGTGACAAGGCGTTGACAAGCAGTGGTCCTTACAAGATGAAAGAAGATGATGCTATGGTTTACAGAAGTCCATATCTCACATCC GGCTCTGCTGGCTTTGCTCTTAATGCAATTAGTAGGGCAATGAAGAAAGACTTGAGGAGATATGTTGAAGAAGCAAAGGCAATGCTATTGGATAACAACT GGGGGGTTCAGACCACAGTGTGTTGGGGCCGTAGAGACCGGTGGTTGAGCTTTGATGGGGTTGAGGAGTTGCTCAAGGATTCAAAAATCAAGCTAGTTGA GCTCCCAATGGCAGGACATCATGTACAAGAGGATTCTGGTGAAGAACTTGGAGGAATCATCTCTGGAATCATTAGCGGGAGGATCCGTAACTGA
AA sequence Show only first row Show all	>Lus10002142 pacid=23181294 polypeptide=Lus10002142 locus=Lus10002142.g ID=Lus10002142.BGIv1.0 annot-version=v1.0 MGMAVQAQQTFWRHRFRNIKSHDVVQAHPLLSLRPSSTRKSTNFSRAASGNDDYYLIDAEESAGDGFSFSGGKYSGEPNPSDEWFKQGKMVKAHPVFGTK EKAQDPIFGLKMGSASQTSDDVFRWFCVESGNADNPTVVLVHGFPSQAYSYRKVLPVLSKNYHPVTFDWLGFGFSDKPQPKYGFDYTLDEYESSLESLIN EIGPTSKKISLVVQGYFCPVAVKYASSHQEKLSSLILLNPPLTAAHVNLPSTLSIFSNFLLGEIFSQDPLRASDKALTSSGPYKMKEDDAMVYRSPYLTS GSAGFALNAISRAMKKDLRRYVEEAKAMLLDNNWGVQTTVCWGRRDRWLSFDGVEELLKDSKIKLVELPMAGHHVQEDSGEELGGIISGIISGRIRN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10002142 [exp]	0	1
AT5G27290			unknown protein		Lus10033822 [exp]	1.0	0.9739
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Lus10027129 [exp]	1.4	0.9630
AT1G74410			RING/U-box superfamily protein...		Lus10001654 [exp]	2.4	0.9544
AT5G27290			unknown protein		Lus10018966 [exp]	2.4	0.9522
AT2G05310			unknown protein		Lus10001175 [exp]	2.8	0.9492
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10041956 [exp]	3.2	0.9535
AT1G60230			Radical SAM superfamily protei...		Lus10000081 [exp]	3.6	0.9388
AT3G17930			unknown protein		Lus10026379 [exp]	3.7	0.9505
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10027729 [exp]	6.0	0.9535
AT3G25480			Rhodanese/Cell cycle control p...		Lus10001215 [exp]	6.3	0.9301

Compare expression of checked genes

Lus10002142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.