Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12800 275 / 1e-94 PSAL photosystem I subunit l (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008747 [exp] 336 / 3e-114 AT4G12830 326 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175600 [exp] 291 / 1e-100 AT4G12800 300 / 3e-104 photosystem I subunit l (.1) Potri.002G239700 [exp] 287 / 2e-99 AT4G12800 289 / 6e-100 photosystem I subunit l (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02605 [flax] [poplar] PsaL Photosystem I reaction centre subunit XI
Representative CDS sequence Show only first row Show all	>Lus10002143 pacid=23181303 polypeptide=Lus10002143 locus=Lus10002143.g ID=Lus10002143.BGIv1.0 annot-version=v1.0 ATGGCTGCAGCTACTTCAGCATCTCCAATGGCTAGCCAACTCAAGAGCAGCTTCAGTACTTCATCCCTCAGGAGATTAGCTGTTCCAAAGGGCATCTCTG GTTCCTCCTTGAGAGTTTTCCCCTCCAGGCGAACTGCTTCTTCCTTCACTGTCAAGGCCATTCAGTCTGAGAAGCAAAACTACCAGGTGGTCCAGCCGAT CAACGGCGACCCGTTCATCGGGAGCCTGGAAACGCCGGTGACATCGAGCCCATTGATCGCATGGTACCTGTCGAACCTGCCAGCGTACAGGACAGCAGTA AGCCCACTTCTGAGAGGAATAGAAGTGGGGCTGGCCCATGGGTTCCTGCTGGTAGGCCCATTCGTTAAGGCCGGACCACTGAGGAACACAGAGTACGCAG GGCAAGCAGGTTCATTGGCAGCGGCTGGACTGGTGGTCATCCTCAGCCTGACGTTGACCATGTACGGAATCGCATCCTTTGGGGAAGGAGAGCCGTCGAC TGCTCCAGGGTTAACGTTGACCGGACGGAAGAAGGTGCCTGACCAGCTGCAGACAGCTGACGGGTGGTCAAAGTTCACCGGAGGGTTCTTCTTCGGTGGG ATTTCAGGGGTGACCTGGGCTTATTTCCTTCTCTATGTCATCAACCTTCCTTACTACGTCAAGTAG
AA sequence Show only first row Show all	>Lus10002143 pacid=23181303 polypeptide=Lus10002143 locus=Lus10002143.g ID=Lus10002143.BGIv1.0 annot-version=v1.0 MAAATSASPMASQLKSSFSTSSLRRLAVPKGISGSSLRVFPSRRTASSFTVKAIQSEKQNYQVVQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV SPLLRGIEVGLAHGFLLVGPFVKAGPLRNTEYAGQAGSLAAAGLVVILSLTLTMYGIASFGEGEPSTAPGLTLTGRKKVPDQLQTADGWSKFTGGFFFGG ISGVTWAYFLLYVINLPYYVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12800		PSAL	photosystem I subunit l (.1)		Lus10002143 [exp]	0	1
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10011913 [exp]	2.2	0.9869
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10018385 [exp]	2.8	0.9838
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10022846 [exp]	3.2	0.9798
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Lus10030191 [exp]	3.5	0.9758
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10025798 [exp]	3.5	0.9862
AT1G22630			unknown protein		Lus10018614 [exp]	3.6	0.9688
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10012086 [exp]	4.2	0.9844
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10007627 [exp]	5.7	0.9720
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10038954 [exp]	7.0	0.9753
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10026205 [exp]	7.1	0.9735

Compare expression of checked genes

Lus10002143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.