Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25470 350 / 3e-121 bacterial hemolysin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008746 [exp] 592 / 0 AT3G25470 373 / 6e-129 bacterial hemolysin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175500 [exp] 407 / 3e-143 AT3G25470 382 / 1e-133 bacterial hemolysin-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01728 [flax] [poplar] FtsJ FtsJ-like methyltransferase CL0492 [flax] [poplar] S4 PF01479 [flax] [poplar] S4 S4 domain
Representative CDS sequence Show only first row Show all	>Lus10002144 pacid=23181297 polypeptide=Lus10002144 locus=Lus10002144.g ID=Lus10002144.BGIv1.0 annot-version=v1.0 ATGGCAGCTCTTCAATTTATGAAGCTTCCCCTAATCTCGCGTCTCTGTAATGGTTATGCTCCATCTTCAGCAAGCTTGTTTCTTTCGCCCAAATCCTTCT TCCTTGTTCGATGGGAGACATCAGACCCAAGTTTTTGCTGTAGATGCTTTGGTTCAAAGCCAGAAAGGATTCAAATACCCAGAAAGAAAAAGAGGCTGGA TGAAGAATGTGTTGATAGGTTCCAGCAGTACAGCAGAACGACGATACAATCTTGGATTATGCAAGGGAAAGTTTTTGTTAACGGCAAGAAAGTAAACAAA GCTGGCACTCCTGTTTCTGACAAAGCCGTTGTGGAAATCACTGCTGAAATCCCCAAATATGTATGTAGAGCTGGGTATAAATTGGAAGCAGCCATAGAAC AACTAGGGGTAGATGTTACTGGCAAAGTAGCTCTGGATTCTGGATTGTCCACCGGGGGTTTTACTGATTGCTTGCTTCAACATGGTGCATCATTTGTCTA TGGAGTTGACGTTGGTTACGGCCAGGTAGCAGACAAAATTAGGCGACATGAACAAGTTAGTGTGATAGAAAGAACAAACTTAAGATACCTGGCTGAGCTT CCCCAGAAAGTCGATATAGCAACTTTGGATCTTTCTTTCATCTCTATTCTCCTGGTTATGCCTGCTGTGGTTGGTCTCATGAAAGATGAGGCAAGTTTGG TGACTCTAGTCAAGCCTCAGTTCGAAGCTCATCGGTCGCAGGTGGGAGGTGGTGGGATTGTGCGAGACTCCCAAGTCCACCAAGAGGTTCTTGAAAAGAT TATAAATGGTGTGGAAAGCTTTGGCTTCCGGAAAAATGGATCCATTGAATCTCCTTTAAAGGGAGCAGAGGGGAACACAGAATTTCTGGTCTACTTCAGT AGGGTAAACAAATCAAGCGACCCAGCAAAGCAGATCGTGAACGAAATGCCAGCAGTTGCAGCTGCAGAACAAATCTCATAG
AA sequence Show only first row Show all	>Lus10002144 pacid=23181297 polypeptide=Lus10002144 locus=Lus10002144.g ID=Lus10002144.BGIv1.0 annot-version=v1.0 MAALQFMKLPLISRLCNGYAPSSASLFLSPKSFFLVRWETSDPSFCCRCFGSKPERIQIPRKKKRLDEECVDRFQQYSRTTIQSWIMQGKVFVNGKKVNK AGTPVSDKAVVEITAEIPKYVCRAGYKLEAAIEQLGVDVTGKVALDSGLSTGGFTDCLLQHGASFVYGVDVGYGQVADKIRRHEQVSVIERTNLRYLAEL PQKVDIATLDLSFISILLVMPAVVGLMKDEASLVTLVKPQFEAHRSQVGGGGIVRDSQVHQEVLEKIINGVESFGFRKNGSIESPLKGAEGNTEFLVYFS RVNKSSDPAKQIVNEMPAVAAAEQIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25470			bacterial hemolysin-related (....		Lus10002144 [exp]	0	1
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10032658 [exp]	2.0	0.9299
AT2G30170			Protein phosphatase 2C family ...		Lus10031355 [exp]	2.4	0.9240
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10039291 [exp]	4.0	0.9381
AT3G55850		LAF3 ISF2, LAF3...	LAF3 ISOFORM 2, LONG AFTER FAR...		Lus10016328 [exp]	5.5	0.8829
AT5G18750			DNAJ heat shock N-terminal dom...		Lus10032539 [exp]	7.9	0.8893
AT2G30695			unknown protein		Lus10004790 [exp]	17.4	0.9185
AT1G73530			RNA-binding (RRM/RBD/RNP motif...		Lus10026364 [exp]	18.0	0.8863
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Lus10008365 [exp]	18.9	0.8266
AT3G25470			bacterial hemolysin-related (....		Lus10008746 [exp]	19.6	0.9167
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10008521 [exp]	22.1	0.8638

Compare expression of checked genes

Lus10002144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.