Plant FIBer expression Database

Lus10002145 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07525 84 / 3e-20 ATG10, ATATG10 autophagy 10, autophagocytosis-associated family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008745
[exp]
221 / 3e-73 AT3G07525 209 / 4e-68 autophagy 10, autophagocytosis-associated family protein (.1.2)
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0097 TypeIII_Chap PF03987 Autophagy_act_C Autophagocytosis associated protein, active-site domain
Representative CDS sequence
>Lus10002145 pacid=23181290 polypeptide=Lus10002145 locus=Lus10002145.g ID=Lus10002145.BGIv1.0 annot-version=v1.0
ATGAGGACAGGAAAAGTACCTAAAGACCAACAAAGACAGCACACACGCAGAATGCCTGCAACCGGAGACGAACGGAGGCCTATATTCTCCAGCGACGAAG
CTCCAGAAACCCTAGAAATTGCAGAGAATTGGAGCGAGTTCGCAGCATTTGCTAGAGCTTTTGCTAAGAAATGGAAGCTGCTAAATAACCCTGATTTCCC
TTCCTGGGTATGGGGCAATTCCCCCAAAGCGTCACTCTTTGCTTCTCCCCATCAAGTGGATGAAGAAGGGTACCTATCACTGGAGAATATATGTATCGTG
AAGTCAACCAAGGTTGATGAAGTTGTTTCCTTAACGGAAGCAGGGACGAGTTTAGCAGCCGACTCTGCAACCTTGGTTGAAAGCAGTGATCTTGATAAGT
TGCATCACTACTTTGATCTGCACATAATCTACAGTGCTTCATCCAGGGTTCCAGTGCTATACTTCCGTGCATATTCCAGTGATGGGGGGAACTTTGGTTT
AAATGAGATTGAAAGAGCTCTTCCTGCTAACTCTGTCAAGTTCTTGTGA
AA sequence
>Lus10002145 pacid=23181290 polypeptide=Lus10002145 locus=Lus10002145.g ID=Lus10002145.BGIv1.0 annot-version=v1.0
MRTGKVPKDQQRQHTRRMPATGDERRPIFSSDEAPETLEIAENWSEFAAFARAFAKKWKLLNNPDFPSWVWGNSPKASLFASPHQVDEEGYLSLENICIV
KSTKVDEVVSLTEAGTSLAADSATLVESSDLDKLHHYFDLHIIYSASSRVPVLYFRAYSSDGGNFGLNEIERALPANSVKFL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G07525 ATG10, ATATG10 autophagy 10, autophagocytosis... Lus10002145
[exp]
0 1
AT5G48905 LCR12 low-molecular-weight cysteine-... Lus10021078
[exp]
3.0 0.8675
AT5G47520 AtRABA5a RAB GTPase homolog A5A (.1) Lus10000047
[exp]
6.2 0.7755
AT5G66680 DGL1 DEFECTIVE GLYCOSYLATION, dolic... Lus10009792
[exp]
6.9 0.8017
AT2G17695 unknown protein Lus10028386
[exp]
8.5 0.8558
AT5G18750 DNAJ heat shock N-terminal dom... Lus10032539
[exp]
9.2 0.8499
AT5G55760 SRT1 sirtuin 1 (.1) Lus10016619
[exp]
10.2 0.8497
AT1G79915 Putative methyltransferase fam... Lus10025778
[exp]
11.0 0.8106
AT3G09860 unknown protein Lus10001400
[exp]
13.2 0.8315
AT3G15180 ARM repeat superfamily protein... Lus10038999
[exp]
17.1 0.7906
AT2G40435 unknown protein Lus10017415
[exp]
18.0 0.8171

Lus10002145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.