Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48385 576 / 0 FRIGIDA-like protein (.1) AT4G14900 184 / 2e-51 FRIGIDA-like protein (.1) AT3G22440 182 / 1e-50 FRIGIDA-like protein (.1) AT1G31814 133 / 2e-33 FRL2 FRIGIDA like 2 (.1) AT5G16320 128 / 7e-32 FRL1 FRIGIDA like 1 (.1) AT5G27230 93 / 2e-19 Frigida-like protein (.1) AT5G27220 66 / 5e-11 Frigida-like protein (.1) AT4G00650 62 / 2e-10 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008744 [exp] 976 / 0 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Lus10032466 [exp] 167 / 6e-45 AT1G31814 227 / 6e-68 FRIGIDA like 2 (.1) Lus10042965 [exp] 164 / 5e-44 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1) Lus10006113 [exp] 155 / 3e-41 AT3G22440 686 / 0.0 FRIGIDA-like protein (.1) Lus10010560 [exp] 145 / 2e-37 AT3G22440 714 / 0.0 FRIGIDA-like protein (.1) Lus10009979 [exp] 94 / 9e-20 AT5G48385 107 / 5e-24 FRIGIDA-like protein (.1) Lus10043012 [exp] 93 / 1e-19 AT4G00650 176 / 5e-50 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10038038 [exp] 90 / 2e-18 AT5G48385 102 / 2e-22 FRIGIDA-like protein (.1) Lus10022433 [exp] 89 / 2e-18 AT4G00650 202 / 7e-60 FLOWERING LOCUS A, FRIGIDA-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G239900 [exp] 775 / 0 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.014G175200 [exp] 757 / 0 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.007G050800 [exp] 307 / 1e-97 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.008G153000 [exp] 175 / 2e-48 AT3G22440 710 / 0.0 FRIGIDA-like protein (.1) Potri.002G206200 [exp] 156 / 2e-41 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.018G078701 [exp] 136 / 3e-34 AT3G22440 189 / 4e-53 FRIGIDA-like protein (.1) Potri.005G044000 [exp] 120 / 2e-28 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.005G043900 [exp] 119 / 7e-28 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044100 [exp] 117 / 2e-27 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.015G110066 [exp] 54 / 1e-07 AT4G00650 140 / 5e-39 FLOWERING LOCUS A, FRIGIDA-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10002146 pacid=23181296 polypeptide=Lus10002146 locus=Lus10002146.g ID=Lus10002146.BGIv1.0 annot-version=v1.0 ATGGAAGATAGTGAACCTGTTGGAACACTCATGGATTCTACTACCTCCAAGATACAGCAGCTTCAGAAAGCATTTGCTGAGCTTGAAAGCCACCGAGCTG TAACTCTCAACTTGAAGTGGAAAGAGCTTGAGGAACATTTTCATGGGCTCGAGAGATCCTTGAAGAGGCGGTTCCATGAGCTGGAAGATCAAGAAAAGGA ATATGAAACCAAGACAAGGGAAGCCCAAGACATCCTGGAGAAGCGGCAAGCTGCTGTTAATGCCAAGGAACATGCTTCATTGGGGAAGCTCCAAGAGAAA CGAGATGCTGCTGTGTTTGCTATTACAAATGCTTTAGAGAAGCACCAAAGTGTGTCTTCTTTGGATTCTTCTCTTCTTGCTACCGATAGTCAATGTGATG AAGTCTCTCTCGAAGACCAACCATCTGACTCCATGCTTGCTGAAAGTAACTTGGGTGAAGTTATCGACCCAGGTGAAAGTGAAAATTCTGAGGCAGTGTC TTATCCTGAGCTGGTCAAACTATGTGAAGAAATGGACGCAGATGGGCTGCACAAGTTTATTTCTGATAACCGTAAGAACCTTGCCGTCCTGAAAGAGGAG ATTCCACTTGCTCTGAAAGCTGCACTTGACCCAGCTCAATTAGTTCTAAACTCTCTGGAGAATTTCTACCCCTTAGAAGACCTTCCCTCTGATGGAAAGA AAGATGCAATCCTACTGGGTGTCCGCAGGACCTGTATTATGTTAATGGAATGCCTTAGCATCTTGCTCATGTATTCAGACAAAGTTTCTGTGTCCAAGGT GATTTCAGATGAGGTCAAAGACCGGGCAAAGGTTATTGCTGAGGGTTGGAACCCAAAGTTGGAAGCTCTGGACTTGGATGCAAGCAATGGGAACTCCTTG GAAGCACATGCATTTTTGCAACTTCTGGCCACCTTTGGCATTGCTTCTGATTTTGATGTCGAAGAGCTGTCTAGGCTGATCCCAATGGTCTCTCGTCGTC GACAAGCAGCTGAGCTCTGTCGATTTCTTGGACTATCTGAGAAAATGCCAGGTGTAATTGAAGTTCTGGTGAACAGTGGAAGACAAATTGATGCAGTGAA CTTGGCATTTGCTTTTGAGTTAACAGACCAGTTCTCACCTGTACCCTTACTGAAGTCTTACTTGAAGGATGCAAAGAGATCTTCTCCACCAGCTAAGAAC AATGTGCAGAATGAGGTGAATGAGCGTGAGCTTGCTGCTCTCAAGGCTGTTATCAAGTGCATTGAAGAACATAAGATGGAGGAGCAGTACCGTGTGGAGC CACTCCAGAAACAACTCCTGCAGTTGGAGAAGGCTAAGGCAGAAAAGAAACGGGCAACTGAAGTTGCTAAGCCGCAATCCAAGAGGCCACGTGCTAATGG TGTCGGGTATGGGCCCCGTATTACCACACCTAACTCTGTTTCTCCTGATAAGACGGCCTTCTATCCAAGAGTTGCAGAGAGGTATCCACAGTATGTTTAC GAGAGACCCTATGTGTACTCATCACCGACTGACAACCATGGCGCACCACAACTGATCCCTGCAGCAACTTACAACTTCGCCCCAAATCATGGCAACTACT TTGGAAACGGCTACCAGTACCCAACCCAGTATCTTCACTAA
AA sequence Show only first row Show all	>Lus10002146 pacid=23181296 polypeptide=Lus10002146 locus=Lus10002146.g ID=Lus10002146.BGIv1.0 annot-version=v1.0 MEDSEPVGTLMDSTTSKIQQLQKAFAELESHRAVTLNLKWKELEEHFHGLERSLKRRFHELEDQEKEYETKTREAQDILEKRQAAVNAKEHASLGKLQEK RDAAVFAITNALEKHQSVSSLDSSLLATDSQCDEVSLEDQPSDSMLAESNLGEVIDPGESENSEAVSYPELVKLCEEMDADGLHKFISDNRKNLAVLKEE IPLALKAALDPAQLVLNSLENFYPLEDLPSDGKKDAILLGVRRTCIMLMECLSILLMYSDKVSVSKVISDEVKDRAKVIAEGWNPKLEALDLDASNGNSL EAHAFLQLLATFGIASDFDVEELSRLIPMVSRRRQAAELCRFLGLSEKMPGVIEVLVNSGRQIDAVNLAFAFELTDQFSPVPLLKSYLKDAKRSSPPAKN NVQNEVNERELAALKAVIKCIEEHKMEEQYRVEPLQKQLLQLEKAKAEKKRATEVAKPQSKRPRANGVGYGPRITTPNSVSPDKTAFYPRVAERYPQYVY ERPYVYSSPTDNHGAPQLIPAATYNFAPNHGNYFGNGYQYPTQYLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48385			FRIGIDA-like protein (.1)		Lus10002146 [exp]	0	1
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10018904 [exp]	1.4	0.8413
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10001726 [exp]	4.1	0.7749
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Lus10032284 [exp]	4.2	0.7984
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	4.9	0.8142
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034075 [exp]	4.9	0.8114
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Lus10035614 [exp]	8.8	0.8269
AT3G26990			ENTH/VHS family protein (.1)		Lus10005665 [exp]	9.9	0.7960
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10041516 [exp]	9.9	0.7556
AT3G21480			BRCT domain-containing DNA rep...		Lus10033984 [exp]	12.0	0.7875
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Lus10017988 [exp]	12.6	0.7157

Compare expression of checked genes

Lus10002146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.