Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48380 717 / 0 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT3G28450 466 / 1e-157 Leucine-rich repeat protein kinase family protein (.1) AT1G27190 442 / 2e-148 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 442 / 3e-148 Leucine-rich repeat protein kinase family protein (.1) AT4G39400 318 / 2e-95 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G55610 311 / 5e-93 BRL1 BRI1 like (.1.2) AT3G13380 311 / 7e-93 BRL3 BRI1-like 3 (.1) AT5G07280 296 / 2e-87 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G45780 269 / 2e-81 Leucine-rich repeat protein kinase family protein (.1) AT5G63930 273 / 1e-79 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008743 [exp] 1093 / 0 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10030811 [exp] 437 / 4e-146 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033533 [exp] 327 / 2e-98 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10037226 [exp] 301 / 2e-98 AT5G48380 221 / 6e-68 BAK1-interacting receptor-like kinase 1 (.1) Lus10036697 [exp] 294 / 1e-95 AT5G48380 215 / 8e-66 BAK1-interacting receptor-like kinase 1 (.1) Lus10020835 [exp] 317 / 4e-95 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 300 / 9e-89 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 299 / 1e-88 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10006817 [exp] 297 / 7e-88 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G240000 [exp] 838 / 0 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.008G078900 [exp] 746 / 0 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G178050 [exp] 744 / 0 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G177900 [exp] 734 / 0 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.001G349900 [exp] 493 / 3e-168 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G003800 [exp] 490 / 5e-167 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G074400 [exp] 490 / 7e-167 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G138600 [exp] 467 / 6e-158 AT1G27190 712 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G081700 [exp] 322 / 1e-101 AT1G27190 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G140500 [exp] 321 / 9e-97 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002147 pacid=23181298 polypeptide=Lus10002147 locus=Lus10002147.g ID=Lus10002147.BGIv1.0 annot-version=v1.0 ATGATGATAAAAAAATGTATGACTGTCAACCTCTTTATTGGCATCTCCGTCTGGTTACTGGTAACCTGTGGGTTGAGCTATGGAGTTCAGTCTGATATTG ACTGCTTGTGGAGCATAAAACACTCTCTCAAGGACCCTTTCAACTACCTCAATTCGACATGGAATTTCAACAACCACACGGAAGGTATCATTTGTAAGTT CACTGGGGTTGAATGTTGGCACCCTGATGAGAGCAAGGTCTTAAACATCCGCCTTGCAGACATGGGGCTCAAAGGTGAATTCCCTGTAGGCCTCAAGAAC TGCACAAGCATAACTGGCTTGGATCTTTCAAGCAATGAGCTCTCTGGACCTATTCCAGTTAATATCGATGAGCTCATTGGCTTTGTAACTTCCCTCGATC TGTCTTCGAACGCCTTCTCCGGGCCGATTCCAACCACGCTTTCCAATTGTAGCTACTTGAATGTGCTGAATCTGGACCATAACCGTCTAACTGGTTCAAT ACCTCTAGAGATCAGCAATCTCAACCGAATCAAGACTTTCAATGTTGCAAACAACCTTCTCTCTGGTCCTGTCCCAATTTTTAGGAGTCCGAATGCTACC ATCAGTGCAGAAAGCTACGCCAATAATCCGGCACTCTGTGGGAAGCCTTTGGATCCCTGCACTACTTTGAAGAAGAAAAACAGCGGAATCATTGTTGGGG CAGCAATTGCCGGAGTAACTGTGGCAGCAATAGGTGTGGGTATTGCCTTGTTATTCTATTTCCGTAAGGCACCTATGATGAAGAAGAAGGACGATGATCC AGAAGGAAACAAATGGGCAAAGAGCTTGAAGGGAGTCAAAGGCACCAAGGCAAGTTATACTAAAACACATTTCTTATGCATCCCAAAAATAGAATGTGTT CCCATTTTCTGTTATCGCCCCGTGTCGAAGATGAAACTGAGTGATCTCTTAAAAGCTACTAACAACTTCCACAAGGACAATATCATTGGTTCTGGAAGAA CCGGGACTATGTATAAAGCAGTTCTTGAAGATGGAACTGCACTCATGGTTAAGAGGTTACAGGATTCTCAGCGTTTCGAACAAGAATTTTTGTCGGAGAT GGCTACTCTAGGGAGTGTGAAACATACCAACCTGCTTCCCCTTTTAGGATTCTGCATTGCTGGCAAGGAAAGGCTGCTGGTTTATGAGAATATGATGAAT GGAAGTCTTTACGTTAACCTGCACGGCGAGGATGAAGACAGAAAACCAATGGAGTGGTCTGTGAGGCTGAAAGTCGCGATAAGAGCTGCAAAAGGATTTG CATGGCTCCATCATAACTGCAATCCACGTATCCTGCACCGAAACATAAGCTCCAAATGCATAATGCTGGACGCAAAGTTCGAACCAAAAATATCTGATTT TGGTCTAGCCAGGTTGATGAATCCGATTGATACCCATTTGAGTACGTTTGTGAATGGAGAATTCGGAGATTTGGGTTACGTTGCTCCGGAGTATGCAAGA ACTCTGAGGGCCACCCCAAAGGGAGATGTATACAGCTTCGGAATCGTCCTCCTGGAGTTGGTTACTAGCGAGAAACCTACACAGGTATCTAGAGCTCCCG AAGACTTCAGAGGGAACCTGGTGGAGTGGGTTAAACTGTTATCAAGCAAGTCTCAACTCCATGACGCCATGGACAAATCTCTGTTAGGGAAAGGAGTGGA CAGTGAGGTGTTCCAGGTGCTTAAAGTAGCCTGCAATTGTGTGGGGGAAGCCCAAAAAGAGAGGCCTTCCATGTTTGAAGTGTACCAGCTGTTAAGAGCG ATTGGGGAGCAGTATCAGTTCACGGCAGAGGATGAGATGATGATGCCTACAGATGGCGGTGATGCTGATTTTATGGAGGAACTGATTGTTGCTCGGGATG GAATCGAGAGTAGTTGA
AA sequence Show only first row Show all	>Lus10002147 pacid=23181298 polypeptide=Lus10002147 locus=Lus10002147.g ID=Lus10002147.BGIv1.0 annot-version=v1.0 MMIKKCMTVNLFIGISVWLLVTCGLSYGVQSDIDCLWSIKHSLKDPFNYLNSTWNFNNHTEGIICKFTGVECWHPDESKVLNIRLADMGLKGEFPVGLKN CTSITGLDLSSNELSGPIPVNIDELIGFVTSLDLSSNAFSGPIPTTLSNCSYLNVLNLDHNRLTGSIPLEISNLNRIKTFNVANNLLSGPVPIFRSPNAT ISAESYANNPALCGKPLDPCTTLKKKNSGIIVGAAIAGVTVAAIGVGIALLFYFRKAPMMKKKDDDPEGNKWAKSLKGVKGTKASYTKTHFLCIPKIECV PIFCYRPVSKMKLSDLLKATNNFHKDNIIGSGRTGTMYKAVLEDGTALMVKRLQDSQRFEQEFLSEMATLGSVKHTNLLPLLGFCIAGKERLLVYENMMN GSLYVNLHGEDEDRKPMEWSVRLKVAIRAAKGFAWLHHNCNPRILHRNISSKCIMLDAKFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYAR TLRATPKGDVYSFGIVLLELVTSEKPTQVSRAPEDFRGNLVEWVKLLSSKSQLHDAMDKSLLGKGVDSEVFQVLKVACNCVGEAQKERPSMFEVYQLLRA IGEQYQFTAEDEMMMPTDGGDADFMEELIVARDGIESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10002147 [exp]	0	1
AT4G21700			Protein of unknown function (D...		Lus10030937 [exp]	2.0	0.8364
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10001970 [exp]	4.0	0.8290
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10002741 [exp]	4.5	0.7996
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039506 [exp]	7.5	0.7944
AT4G35220			Cyclase family protein (.1)		Lus10014092 [exp]	10.0	0.8102
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10023705 [exp]	10.2	0.8165
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10040079 [exp]	10.2	0.7738
AT2G37730			Protein of unknown function (D...		Lus10024364 [exp]	12.0	0.7635
AT2G21100			Disease resistance-responsive ...		Lus10034482 [exp]	12.0	0.7847
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10008743 [exp]	13.5	0.7963

Compare expression of checked genes

Lus10002147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.