Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48370 647 / 0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2) AT2G30720 538 / 0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008741 [exp] 504 / 7e-179 AT5G48370 360 / 3e-123 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2) Lus10008740 [exp] 285 / 2e-95 AT5G48370 232 / 5e-76 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G240100 [exp] 689 / 0 AT5G48370 664 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2) Potri.014G174800 [exp] 688 / 0 AT5G48370 690 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2) Potri.017G009800 [exp] 567 / 0 AT2G30720 571 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002148 pacid=23181292 polypeptide=Lus10002148 locus=Lus10002148.g ID=Lus10002148.BGIv1.0 annot-version=v1.0 ATGGCAAGATCACGCATCTGCAACTTGTCGGTTTCCTGCTTTGCTCCAAGAACCCTAAAACCTTCTTCTTCTTATTTCTTCTCCTCCAAATCTCCTCCAG ACTTTATCGCTCCATCATCTTTCCCTCCCGAAATGGACGTCAAAACGATCCCAGTGGTCTCCACATTCGCCAATCCTTTCGACACCTCCAATGGCGGCGG GGGGGGTCCCCTCGCCGCTTCCGCCCGCAAACCCATCGCTCTCTGGCCTGGAATGTACCATTCCCCTGTCACCAACGCTCTGTGGGAAGCTAGGTCTAAG ATCTTCGACACCATGCTCGATCCCCCTAAAGACGCCCCTCCCCAGACCAAATTGCTCACCAAGTCCCCTGACCAGAGCCGCACCAGCATTCTGTACAACT TCTCCTCTGATTACATCCTCAGGGAGCAGTATCGCGATCCTTGGAATGAAGTCAGGATCGGGAAATTGCTCGAGGACCTTGATGCTTTGGCTGGCACCAT TTCCGTCAAGCACTGTGCTGATGAAGATTGCACAACAAGGCCGCTTCTATTAGTGACGGCTTCTGTTGATAGGATTGTTCTTAAGAAGCCAATCAGTGTA GATGTTGATCTCAAAATTGTTGGTTCTGCAATTTGGGTGGGCCGCTCCTCAATTGAGATTCAATTGGAAGTTATTCAGCCTGCAAATGAGGACTCTGATG TTGCAGACTCGGTAGCACTAACAGCCAACTTCATATTCGTGGCTCGTGACTCACAAACTGGGAAAGCTGCTCAAGTGAACCGACTGGTCCCAGAAACCAA CCAAGAGAAGCTGCTGTTCGAAGAAGCTGAAGCAAGGAGTAACCTGAGGAAGAGGAAAAGGGTGGTGGATGATGACAAAAAGGAAGTTGACGGGAGTGGC AGGGAAGCGAGTCGACTCAAGGCACTATTGGCTGAAGGAAGAGTCTTCTGTGACATGCCAGCTTTAGCAGACAGAAACAGTATTCTTCTGAGGGATACTC GTCTTGAAAACTCCCTCATCTGCCAGCCACAGCAAAGGAACATGCACGGTCGAATCTTCGGAGGTTTCCTGATGCACAGGGCGTTCGAGTTGGCTTTCTC AACCTCCTATGCTTTCGCTGGCTCTGTCCCTTACTTTCTGGAAGTTGATCACGTCGACTTCTTAAGACCTGTGGACGTGGGGGACTTCTTGCGGCTCAAG TCTTGCGTTCTGTACACCGAATTGGAGAACCCCGATGAGCCTCTAATCAACGTTGAAGTTGTTGCTCATGTCACCAAGCCGGAACTAAGGTCCAGTGAGG TGACGAACACGTTTTACTTCACCTTCACTGTACGTCCAGAGGCGAAAGCTACGAAAAATGGGAACATGCTTCGGAATGTGGTTCCAACTACTGAGGAAGA AGCAAGGCTCATTCTGGAGCGGAAAGATGCAGAGGCCTTGAATTTAGTTAAGCTTGCTTGA
AA sequence Show only first row Show all	>Lus10002148 pacid=23181292 polypeptide=Lus10002148 locus=Lus10002148.g ID=Lus10002148.BGIv1.0 annot-version=v1.0 MARSRICNLSVSCFAPRTLKPSSSYFFSSKSPPDFIAPSSFPPEMDVKTIPVVSTFANPFDTSNGGGGGPLAASARKPIALWPGMYHSPVTNALWEARSK IFDTMLDPPKDAPPQTKLLTKSPDQSRTSILYNFSSDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCADEDCTTRPLLLVTASVDRIVLKKPISV DVDLKIVGSAIWVGRSSIEIQLEVIQPANEDSDVADSVALTANFIFVARDSQTGKAAQVNRLVPETNQEKLLFEEAEARSNLRKRKRVVDDDKKEVDGSG REASRLKALLAEGRVFCDMPALADRNSILLRDTRLENSLICQPQQRNMHGRIFGGFLMHRAFELAFSTSYAFAGSVPYFLEVDHVDFLRPVDVGDFLRLK SCVLYTELENPDEPLINVEVVAHVTKPELRSSEVTNTFYFTFTVRPEAKATKNGNMLRNVVPTTEEEARLILERKDAEALNLVKLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10002148 [exp]	0	1
AT1G11090			alpha/beta-Hydrolases superfam...		Lus10011212 [exp]	1.4	0.9099
AT3G13620			Amino acid permease family pro...		Lus10034046 [exp]	6.9	0.8751
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10007366 [exp]	7.7	0.9038
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035696 [exp]	7.7	0.8986
					Lus10026102 [exp]	7.7	0.8866
AT4G13150			unknown protein		Lus10025925 [exp]	8.4	0.8874
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	8.5	0.9036
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10006249 [exp]	14.7	0.8880
AT3G45740			hydrolase family protein / HAD...		Lus10023480 [exp]	15.7	0.8591
AT4G02920			unknown protein		Lus10029640 [exp]	18.6	0.8954

Compare expression of checked genes

Lus10002148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.