Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25500 648 / 0 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 466 / 3e-148 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G67470 443 / 1e-139 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G05470 346 / 2e-103 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G54650 345 / 3e-103 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT5G48360 295 / 6e-86 Actin-binding FH2 (formin homology 2) family protein (.1) AT4G15200 293 / 2e-85 AFH3 formin 3 (.1.2) AT3G07540 264 / 2e-74 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 259 / 2e-73 ATFH8 formin 8 (.1) AT1G59910 253 / 5e-70 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008739 [exp] 1433 / 0 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10019298 [exp] 453 / 2e-142 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10025195 [exp] 448 / 2e-141 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 448 / 1e-140 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10004505 [exp] 378 / 8e-116 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 360 / 1e-109 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10031496 [exp] 350 / 9e-106 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10015175 [exp] 348 / 8e-105 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10011168 [exp] 330 / 3e-97 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G174700 [exp] 811 / 0 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 712 / 0 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G140200 [exp] 592 / 0 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 582 / 0 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G054900 [exp] 467 / 2e-148 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.013G017900 [exp] 374 / 4e-113 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.005G026300 [exp] 362 / 1e-108 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.011G131700 [exp] 346 / 8e-103 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 333 / 5e-98 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 312 / 2e-91 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10002149 pacid=23181299 polypeptide=Lus10002149 locus=Lus10002149.g ID=Lus10002149.BGIv1.0 annot-version=v1.0 ATGCCCATTCCTTCCTCCTTCCTCTTCTTCTTTCTAACACTACTGCTTTCCCTCCTCCTCCGCCGTGGATCTTCCTTCCCAGTCCGCCGGATTCTCCACC AACCCTTCTTCCCTCTCGACTCTACAAACCCTCCTTCCCCTTCCCCTTCCTCTTTACCTCATTCCCCTCCGGCAAAGCTTCCTTTTTCCTCCACCACTCC AACCGCCACCACTCCAAACTCCCCCTTTTTCCCAACTTACCCTTCGCCACCTCCTCCGCCACCGTCTCCGGCCAACTTCGCCTCCTTCCCTGCCAACATC TCCTCCCTAATCCTCCCCCAATCCTCTTCCCCTAAGCCTTCCTCCTCCCACAAACTCCTTGCTCTTTCCCTCTCTTTCCTCCTCGCCGCCCTCATTGTCT CATCCATCCTCATCTTCTACTTCTGCCGCCGCCGCCCTCCTCCCACTCCCAACTTCGATTCCAAACCCCACGGCGATCCTTCCGCTTCCTCCGACCACAC AACCAGCTCCCGTCTCTTCTCCAATGCCGATCGATCTCGCTCTTCCAACACTCATAAATTCCGTCCTACCAACACTACGAACTCCTCCGAGTTTCTCTAC CTCGGCACTCTCGTAAACTCCCACGGCATCGGCGCCGACGCCGCCGGTGGTCCTGTTTCCGAATCCTCTCCTGATGTTGTCGGGAAGATGGATTCCCCTG AGCTCCGTCCTCTGCCTCCGCTTCATCGCCAGAGTGGGGAAGTTGTCAATGAAGAAGAGGATGAAGAAGTGTTTTATTCTCCCAGAGGGTCATTGCACGG CGGCGGAGGAGGAGGAGGAGGCCGTGATAGCTCTGTTGGGGCGGGATCCGGATCCATGAGGATGTTTCGGACAATGGGTGCTCCGGATTTTGAAGGAGGA ACCTCTGATTCAACTTCTTGCTCCTCCGATTCCTCATCTGGATCTCCCGCTCGCTCCCAATCGGTTAGTATTTCTCCTCCGGCGAGCTTGAGCCCGCGTC CCAAGTCCCCTGAATCTACCCACCCGCAGCTTGTTCATCCAGCTCCTCACCTCACTTCTGGTTGGCCGGCGTCGCCTTCGCTCTCTGCTTCTTCATCGCC CAGGATTTCTCTTAACTTGGAGCAAATCCATCGGCCTAATTCAAGGTCGTCTAGAGCTTCTTCTTCGGCTGGGAACAATGACTTGGATCGGAATGTGCTG CGGTCTCCGTCTCTGTCTCCGGCGAGGATTTTGAATCCGTTGAATCAGTCGAATCAAGGAAAGCTTTCGTCTTTACCGTCGTCTGTTTCTAACTCGGCTG CATCTTCTCCCAAGCTATGGAACGCTCTGAATCAAAACGTACGGTCGTTTTCAATGTCTTCCGCTTCTTCTTCTACTACCTCGCCGGACAGAGCGTCGGA GGAGAAATCTCAATCTCATCAATCTGATCAGTCTCCTAGGATTTCGAATGATTTGGATCGGAATGGGCAGTCTTCATTGCTGTCATCTGCTTGGACTTCG CCGGACCACAACAGCAGCATCAAGCTTCATCCGCTTCTGTCTCCTCAGACCACCATAGCTTCTTCATCGCCGGACAGAGGCTTCGGGGATGGATCGCCTT CGCCGGCTGCTCCATTGAACGTTTCTAGGCTGAACGTTAGGATGAGCAGTGTTCTTGGGCAGCCTATTTCAGCTCCTCCTCCTCCTCCACCGCCTCCGCC TCCTGCATTGCCACCTCGGCCACTTTCTGTCCCGACAAGGGATCTGGAGTCTTCTCCGGTGGCATCCACACCAATAGGTCAGTCAATTTCAACCACGGCA GCGCCGCCGGTGCTTATACCGCCTTCCAGGCCGTTTGTGCTGCAAACGCCGGCCAAAGTATCTCCGATTCAATTGCCACCTAGCGCTGAAGGGGAAGACA GCTTTGAGGATACTCCGAGGCCAAAGTTGAAGGCTTTACATTGGGATAAAGTTCGAGCTAGCTCCGATCGTGAAATGGTTTGGGATCAGATCAGATCCAG CTCGTTCAAACTGAATGAGGAAAAAATTGAAGAATTGTTTGTTATGAATGCCCCAAAGCCAAAGCCACTACATGGAGGAACTCCATCTCCAACCAATCTA TTTGCTAACCAGGAAACTCGTGTTCTTGATCCCAAAAGAGCTCAGAACATTGCTATCTTGCTCAGGGCTTTGAATGTCACCATCGAGGAAGTATGTGAAG CACTCTTAGAAGGTAATACTGAGACTCTTGGAACTGAGCTTCTGGAGAGTTTGGTGAAGATGGCTCCAAGCAAAGAAGAGGAGCGTAAGCTGAAAGAGTA CAAAGACGACACACCGGTGAAGCTTGGTCATGCTGAGAAGTTCCTCAAGGCAGTGTTAGATGTACCTTTCGCGTTTAAGCGAGTGGATGCAATGCTTTAC ATGGCTAATTTCGAGTCAGAGATTGAGTACCTCAGAAAGTCTTTTGAAAACCTCGAGGCAGCCTGTGAGGAACTAAGAAACAGTAGGATGTTCTTGAAAC TTTTAGAAGCTGTACTAAAGACGGGGAACCGGATGAATGTTGGGACCAACCGTGGCGACGCCCTTGCATTCAAGCTAGATACACTTCTGAAGCTAGTTGA CGTGAAGGGTGCAGATGGAAAAACGACGCTGCTGCATTTTGTTGTGCAGGAGATCATAAGAACTGAGGGAGCTCGGCTCTCTGGTTCCAACCAAGCTCAG AACGCCACTACTCAATGTGATGATGTCAAGTGCAGGAAGCTCGGGCTGGAAGTGGTTTCAGGGCTGAGTTCGGATCTCGGCAACGTGAAGAAAGCAGCTG CTATGGATTCTGATGTGCTTAGCAGTGAAGTCACCAAGCTTTCTATCGGTATCGAGAAGATAAGCGAGATCGTGAAGCTAAACGAGAGGATGGGGTTGAG TGGAAGTGGTCAGAAGTTTACAGAATCACTGAATAAGTTCTTGGAAATGTCGGAAGGAGAGATCATAAGGATTCAAGCGCAGGAAAGTGTTGCATTGTCC TTGGTGAAGGAAATAACAGAATACTTCCATGGGAACTCAGCAAAGGAAGAAGCTCACCCTTTCAGAATCTTCATGGTCGTCAGGGACTTCTTATCGGTTC TCGACAGGGTATGCAAAGAAGTTGGAATGATAAACGAGCGTACCATTGTTAGTTCGGCGTATAAATTCCCAGTACCGGTGAATCCAACGCTCCCTCAGGC ATTCCCTGGACCTGATGCTAAGAAGCAGGACAGTGCGTCCGACGAAGAAACGGCATTGCCATAG
AA sequence Show only first row Show all	>Lus10002149 pacid=23181299 polypeptide=Lus10002149 locus=Lus10002149.g ID=Lus10002149.BGIv1.0 annot-version=v1.0 MPIPSSFLFFFLTLLLSLLLRRGSSFPVRRILHQPFFPLDSTNPPSPSPSSLPHSPPAKLPFSSTTPTATTPNSPFFPTYPSPPPPPPSPANFASFPANI SSLILPQSSSPKPSSSHKLLALSLSFLLAALIVSSILIFYFCRRRPPPTPNFDSKPHGDPSASSDHTTSSRLFSNADRSRSSNTHKFRPTNTTNSSEFLY LGTLVNSHGIGADAAGGPVSESSPDVVGKMDSPELRPLPPLHRQSGEVVNEEEDEEVFYSPRGSLHGGGGGGGGRDSSVGAGSGSMRMFRTMGAPDFEGG TSDSTSCSSDSSSGSPARSQSVSISPPASLSPRPKSPESTHPQLVHPAPHLTSGWPASPSLSASSSPRISLNLEQIHRPNSRSSRASSSAGNNDLDRNVL RSPSLSPARILNPLNQSNQGKLSSLPSSVSNSAASSPKLWNALNQNVRSFSMSSASSSTTSPDRASEEKSQSHQSDQSPRISNDLDRNGQSSLLSSAWTS PDHNSSIKLHPLLSPQTTIASSSPDRGFGDGSPSPAAPLNVSRLNVRMSSVLGQPISAPPPPPPPPPPALPPRPLSVPTRDLESSPVASTPIGQSISTTA APPVLIPPSRPFVLQTPAKVSPIQLPPSAEGEDSFEDTPRPKLKALHWDKVRASSDREMVWDQIRSSSFKLNEEKIEELFVMNAPKPKPLHGGTPSPTNL FANQETRVLDPKRAQNIAILLRALNVTIEEVCEALLEGNTETLGTELLESLVKMAPSKEEERKLKEYKDDTPVKLGHAEKFLKAVLDVPFAFKRVDAMLY MANFESEIEYLRKSFENLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDALAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARLSGSNQAQ NATTQCDDVKCRKLGLEVVSGLSSDLGNVKKAAAMDSDVLSSEVTKLSIGIEKISEIVKLNERMGLSGSGQKFTESLNKFLEMSEGEIIRIQAQESVALS LVKEITEYFHGNSAKEEAHPFRIFMVVRDFLSVLDRVCKEVGMINERTIVSSAYKFPVPVNPTLPQAFPGPDAKKQDSASDEETALP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Lus10002149 [exp]	0	1
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10008739 [exp]	1.0	0.9471
AT2G34510			Protein of unknown function, D...		Lus10038495 [exp]	2.4	0.8766
AT3G06130			Heavy metal transport/detoxifi...		Lus10021941 [exp]	2.4	0.9062
AT3G06130			Heavy metal transport/detoxifi...		Lus10041228 [exp]	4.0	0.8704
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10008407 [exp]	4.2	0.8655
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10014475 [exp]	5.7	0.8510
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10032313 [exp]	6.3	0.8545
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10019814 [exp]	6.3	0.8669
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10025726 [exp]	7.0	0.8589
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Lus10001522 [exp]	7.3	0.8554

Compare expression of checked genes

Lus10002149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.