Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028948 [exp] 214 / 3e-72 ND / Lus10007472 [exp] 201 / 5e-67 ND 38 / 0.002 Lus10008736 [exp] 181 / 7e-60 ND / Lus10029851 [exp] 125 / 6e-37 ND / Lus10030380 [exp] 124 / 8e-37 ND / Lus10037862 [exp] 122 / 4e-36 ND / Lus10037861 [exp] 122 / 6e-36 ND / Lus10019815 [exp] 120 / 3e-35 ND / Lus10014101 [exp] 120 / 4e-35 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081800 [exp] 129 / 2e-38 ND / Potri.014G082700 [exp] 129 / 2e-38 ND / Potri.019G100100 [exp] 125 / 9e-37 ND / Potri.014G082000 [exp] 124 / 1e-36 ND / Potri.014G081900 [exp] 124 / 1e-36 ND / Potri.002G158600 [exp] 121 / 2e-35 ND / Potri.002G158700 [exp] 121 / 2e-35 ND / Potri.003G126200 [exp] 115 / 3e-33 ND / Potri.017G153100 [exp] 110 / 5e-31 ND / Potri.009G009700 [exp] 105 / 3e-29 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002152 pacid=23181291 polypeptide=Lus10002152 locus=Lus10002152.g ID=Lus10002152.BGIv1.0 annot-version=v1.0 ATGAAGGCTTTCACCACCTTGATCATCATCGCACTCGCCTTCCTCTTGGCCGCCGACGTTGAATCTCGAGCCATCCTCAACACAACTACGGCCGGGACAA ACCCATCCACAAAACTGGCCAAGATAACGAATGCAAAGGCTATGCTCACAATCAATGGCTTCCAGAAAGGCGAGTCCGGTGGCGGCCCAGCTGCGTGCGA TGGGAAGTTCCACTCCGACAATATGCCGATCGTTGCGCTGTCTACCCCATGGTACGCTAATGGCCAACGGTGCTTCCGGTCCATCACTATCACGGCCGCG AATGGGAATTCTGTGAGTGCTACGGTGGTGGATGAATGTGACGTCACTCACGACCATTGTAAGCGCAACATCGTCGATGGGTCTAAAGCGGTGTGGACGG CTCTCAACGTGCCGCGTAAGCAGTGGGGACTTATGGCCGTTACTTGGTCCGACGAATGA
AA sequence Show only first row Show all	>Lus10002152 pacid=23181291 polypeptide=Lus10002152 locus=Lus10002152.g ID=Lus10002152.BGIv1.0 annot-version=v1.0 MKAFTTLIIIALAFLLAADVESRAILNTTTAGTNPSTKLAKITNAKAMLTINGFQKGESGGGPAACDGKFHSDNMPIVALSTPWYANGQRCFRSITITAA NGNSVSATVVDECDVTHDHCKRNIVDGSKAVWTALNVPRKQWGLMAVTWSDE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002152 [exp]	0	1
					Lus10005187 [exp]	1.0	1.0000
					Lus10010117 [exp]	1.4	1.0000
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	1.7	1.0000
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	2.0	1.0000
AT2G25010			Aminotransferase-like, plant m...		Lus10008761 [exp]	2.2	1.0000
					Lus10012774 [exp]	2.8	0.9642
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10027430 [exp]	3.7	0.9671
					Lus10030974 [exp]	3.9	0.7951
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Lus10003430 [exp]	4.5	0.9486
					Lus10014200 [exp]	4.7	0.8590

Compare expression of checked genes

Lus10002152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.