Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01210 1172 / 0 glycosyl transferase family 1 protein (.1) AT5G04480 706 / 0 UDP-Glycosyltransferase superfamily protein (.1.2) AT3G15940 47 / 9e-05 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008732 [exp] 1953 / 0 AT4G01210 1264 / 0.0 glycosyl transferase family 1 protein (.1) Lus10028829 [exp] 691 / 0 AT5G04480 1216 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10017452 [exp] 689 / 0 AT5G04480 1202 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10037523 [exp] 48 / 5e-05 AT1G52420 770 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10011469 [exp] 45 / 0.0003 AT1G52420 765 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G092500 [exp] 1401 / 0 AT4G01210 1237 / 0.0 glycosyl transferase family 1 protein (.1) Potri.002G166100 [exp] 1387 / 0 AT4G01210 1168 / 0.0 glycosyl transferase family 1 protein (.1) Potri.008G029400 [exp] 731 / 0 AT5G04480 1237 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.010G232000 [exp] 718 / 0 AT5G04480 1229 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10002154 pacid=23181286 polypeptide=Lus10002154 locus=Lus10002154.g ID=Lus10002154.BGIv1.0 annot-version=v1.0 ATGGGGTCCTTGGAATCCGGCGGCCTTCCACTCAAGCGGGAAGTAGGTCTCTACCGTTCTCCGTCAGCTGGCGGTAATAATAAAACAACCGAGAAGCAGC TGCAGCAGCACCACTCGTTCCTGCAGAGACCGTCCAGATCGAGATTCTCCCGGTTCTTCTTCTTCAAGAAGCTCGATTACCTCCTATGGATTTGCACGGT CGCTGTATTCCTCTTCTTTGTCGTTGTCTTCCAGATGTTCTTGCCCGGCTCCGTCGTTGAGAAGTCCGAGGGTTCCCCTCCCGGCGGTTTTGACTTCGGT GGGGATTTCGCTTATCTGAAGCAGATTGGTGGATTGGATTTTGGTGACGATGTTGAGTTCAAGCCGTCCAAGCTGCTGGAGAAGTTTGGAATTGAAGCTA AGAGAGAGCTCCGTCCTTCTCCCATGTCGAATGAGACTCAATTGCAGCGCTTCGCTTATCGGAAACCTCAGCTCGCATTCGTATTTGGGGATCTATTAGT TGACCCGCAGCAGCTGCTAATGGTTACAGTGGCGACTGCACTGCAGGAGATTGGCTACTCAATTCAGGTTTATTCACTGGACGATGGTCCTGTGCATGAC ATTTGGAAGAGCATGGGGATTTCAGTAACAATTTTCAAAGATGATCAGACAACAAATATCTTTATTGATTGGCTCAACTTTGATGGTGTAGTTGTTAGCT CTCTTGAAGCCAAGGAGGTTCTATCTTGTTTCATGCATGAACCTTTCAAATCTGTGCCTCTCATATGGGCCATCCATGAAAGTGCACTTGCTATTCGTTT AAGGCAATATGATTCAAGTGGGCTGATTGAGCTCATTGACGATTGGAAAAAAGTTTTCAACCGCGCTACTGTAATTTTGTTCCCGAACCATGTTCTACCG ATGATGTATGGAGCCTTTGATACTGGAAATTATTATGTTGTACCTGGTTACCCTGCTGAAGTGGGAGAAGTAGACAATTCAGTGGCATTATATAATAAAC AACGTATGGAAATGGGTTATGGGTCCAATGACATTGTCATTGTGGTAGCTGGAAGTCAGTTTCTCTATAGGGGTTTGTGGGTTGAGCATGCTCTTGTGCT ACAGGCTCTCCTACCAATCATTTCTGAATTCCCACTTGAAAACAGTTCCAGTTTTCATCTGAAAATCATCGTTTTAAGTGGAAACTCAAATAGCAACTAC AGTATGGCTATAGAGGCTATTGCAGCAAAGTTGAGCTATCCAAATGGTGTTGTGAAACACATAGGTGCCAGTGAAGATGTCAGCAGTGTATTAAATGCAG CTGATCTTATGGTATATGGTTCCTTCCATGAGGAGCAGTCCTTTCCAGAAGTTGTGATGAAAGCAATGTCCATGGGAAAGCCTGTCATTGCCCCAGACAT TGCTGTGATTAGGAAATATGTCAATGACAGGGTTAATGGGTATCTTTTCCCAAAAGACAAGATCAAGGTTCTAACTGAAATTCTATTGGAACTGATCTCA AGGGGGGAATTGTCGCCTCAGGCTCATGAAGTTGCTTCAAAGGGAAAAATCACTGCTAAGAATCTGTTGGTTTCTGAAACAATTGAAGGCTATGCTCTGC TACTTGAAAATATTCTCAAACTTCCATCAGAAGTTACACCTCCACGAGCTGTTACGGAAATCCCTCCTATATTGAAAGAAGAATGGCGGTGGCATCTATT TCAGCCACTTTTGAATTCTATGACAGAGGACAGAACACTGAAGAGTTCCAGGTTTTTAGATAAGTTTGAGGAGCGGTGGAACGATACACATGGACAGGGT TCTGGTTCTGTAGCTGCTCCTGATGACCCATTTCTCTATGGAATCTGGGCAGAACAGAAAAATGACCAATTGCTTTATGTTAGAAAGAGAAGAGAAGAAG AAGAACTTAAAGACCGGACTGACCAACCTCGTGGAACATGGGAGGAAGTATATCGGAATGCTAGAAGGGCTGACCGGATTAGGAATGACTTACATGAAAG GGATGAAGGAGAACTAGAGAGGACAGGTCAACCTCTGAGTATTTATGAACCATACTTTGGAGAAGGGACATGGTCTTTTCTGCACAGTCGATCACTTTAT CGCGGCATGTGCTTGTCCACAAAAGGTAAAAGACCTATGACAGACGACATCGATGCACCATCTCGTCTACAACTTCTTAATGACCCTTACTACCGGGATA CCCTCGGTGAATATGGAGCATTTTTCGCAATTGCCAATCGGTTTGACCGCATTCATAAGAATGCTTGGATAGGTTTCCAGTCTTGGAGAGCTACTGCAAG GAAGGAACCTTTGTCTATGGTCGCTGAAAAGGCATTGTTAGATGCGATCCAGACACGGAAGTATGGAGATGCACTTTATTTTTGGGTTCGCTTGGACACA GATCCAAGAAACCACATGCAGCAGGATTTCTGGACATTCTGCGACGCCATAAACGCAGGAAATTGCAAGTTAGCTTTCTCGAAGGCCATGCGCAAGATGT ATGGTATCAGTGAGGATCTTGAATCCCTGCCACCAATGCCTGTAGATGGTGATACATGGTCCGTCATGTTTAGTTGGGCTTTGCCAAGTAGATCGTTCCT CGAGTTTGTAATGTTCTCAAGAATGTTTGTAGACTCACTGGATGCAGAAATGTACGACGAACACCATCGAACTGGCCATTGCTATTTGAGTTTATACAAG GATAAGCATTGCTATTCTCGAATTCTCGAGCTACTCGTCAACGTCTGGGCATACCACAGTGCTAGACAGATGGTTTACATTAACCCAGAGACGGGAACGA TGCAAGAGCAGCATAACATGAAGAACAGGAGAGGGAAAATGTGGGTGAAGTGGTTCTCTTACATGACGCTAAAGAGCATGGACGAGGAGTTAGCGGAGGA GGCGGATTCAGACCACCCCAGGAGGAGGTGGCTGTGGCCTTCAACGGGTGAGATATACTGGGAAGGCATGTTTGAGAAGGAGAGGAAAATGATGAATCAG CAGAAAGAGAAGAGGAAGCAACTAAGCAAGGACAAACTCAGTAGAATGAGGAAGAAACGACGGCAAAAGGCGATCGGTAAATTCGTGAAGCCCCCGCCGG AGGATGAGGGGGAGAATTCGACCATGTCGGATGTCCGGAGATTGTTATAG
AA sequence Show only first row Show all	>Lus10002154 pacid=23181286 polypeptide=Lus10002154 locus=Lus10002154.g ID=Lus10002154.BGIv1.0 annot-version=v1.0 MGSLESGGLPLKREVGLYRSPSAGGNNKTTEKQLQQHHSFLQRPSRSRFSRFFFFKKLDYLLWICTVAVFLFFVVVFQMFLPGSVVEKSEGSPPGGFDFG GDFAYLKQIGGLDFGDDVEFKPSKLLEKFGIEAKRELRPSPMSNETQLQRFAYRKPQLAFVFGDLLVDPQQLLMVTVATALQEIGYSIQVYSLDDGPVHD IWKSMGISVTIFKDDQTTNIFIDWLNFDGVVVSSLEAKEVLSCFMHEPFKSVPLIWAIHESALAIRLRQYDSSGLIELIDDWKKVFNRATVILFPNHVLP MMYGAFDTGNYYVVPGYPAEVGEVDNSVALYNKQRMEMGYGSNDIVIVVAGSQFLYRGLWVEHALVLQALLPIISEFPLENSSSFHLKIIVLSGNSNSNY SMAIEAIAAKLSYPNGVVKHIGASEDVSSVLNAADLMVYGSFHEEQSFPEVVMKAMSMGKPVIAPDIAVIRKYVNDRVNGYLFPKDKIKVLTEILLELIS RGELSPQAHEVASKGKITAKNLLVSETIEGYALLLENILKLPSEVTPPRAVTEIPPILKEEWRWHLFQPLLNSMTEDRTLKSSRFLDKFEERWNDTHGQG SGSVAAPDDPFLYGIWAEQKNDQLLYVRKRREEEELKDRTDQPRGTWEEVYRNARRADRIRNDLHERDEGELERTGQPLSIYEPYFGEGTWSFLHSRSLY RGMCLSTKGKRPMTDDIDAPSRLQLLNDPYYRDTLGEYGAFFAIANRFDRIHKNAWIGFQSWRATARKEPLSMVAEKALLDAIQTRKYGDALYFWVRLDT DPRNHMQQDFWTFCDAINAGNCKLAFSKAMRKMYGISEDLESLPPMPVDGDTWSVMFSWALPSRSFLEFVMFSRMFVDSLDAEMYDEHHRTGHCYLSLYK DKHCYSRILELLVNVWAYHSARQMVYINPETGTMQEQHNMKNRRGKMWVKWFSYMTLKSMDEELAEEADSDHPRRRWLWPSTGEIYWEGMFEKERKMMNQ QKEKRKQLSKDKLSRMRKKRRQKAIGKFVKPPPEDEGENSTMSDVRRLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01210			glycosyl transferase family 1 ...		Lus10002154 [exp]	0	1
AT4G39050			Kinesin motor family protein (...		Lus10041958 [exp]	2.4	0.8508
AT1G77680			Ribonuclease II/R family prote...		Lus10014833 [exp]	2.8	0.8332
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10040387 [exp]	8.4	0.7666
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10040815 [exp]	9.2	0.7924
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	12.2	0.8218
AT1G60070			Adaptor protein complex AP-1, ...		Lus10030640 [exp]	12.3	0.8109
AT1G08350			Endomembrane protein 70 protei...		Lus10004873 [exp]	14.5	0.7359
AT1G77680			Ribonuclease II/R family prote...		Lus10025614 [exp]	15.5	0.7696
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10028427 [exp]	16.2	0.7827
AT5G28350			Quinoprotein amine dehydrogena...		Lus10005119 [exp]	17.6	0.8095

Compare expression of checked genes

Lus10002154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.