Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01200 186 / 3e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G33320 128 / 1e-33 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G04540 125 / 2e-32 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G13350 100 / 3e-24 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G04360 86 / 6e-19 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G45760 52 / 1e-07 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) AT5G23950 46 / 1e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G55470 44 / 3e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G61190 40 / 0.0005 BAP1 BON association protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008731 [exp] 462 / 2e-166 AT4G01200 222 / 3e-72 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014466 [exp] 128 / 1e-34 AT1G04540 245 / 7e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10003570 [exp] 117 / 2e-30 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 115 / 2e-29 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10020938 [exp] 77 / 1e-17 AT2G39650 54 / 2e-09 Protein of unknown function (DUF506) (.1) Lus10030501 [exp] 54 / 5e-08 AT2G40815 168 / 4e-49 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008004 [exp] 47 / 5e-06 AT2G45760 56 / 1e-09 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10024505 [exp] 46 / 8e-06 AT2G45760 58 / 3e-10 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10012856 [exp] 47 / 9e-06 AT1G76820 1211 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166400 [exp] 229 / 8e-75 AT4G01200 211 / 4e-68 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G065300 [exp] 122 / 6e-32 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 122 / 1e-31 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G021300 [exp] 115 / 5e-30 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 114 / 3e-29 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G458101 [exp] 59 / 3e-11 AT2G13350 74 / 1e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G024200 [exp] 52 / 2e-07 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G108300 [exp] 49 / 5e-07 AT2G45760 59 / 7e-11 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.008G064900 [exp] 47 / 7e-06 AT1G07310 150 / 1e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G209800 [exp] 46 / 1e-05 AT3G16510 137 / 8e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10002155 pacid=23181301 polypeptide=Lus10002155 locus=Lus10002155.g ID=Lus10002155.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAATCCAAGATCTTGGAGATCAACCTCATCTCCGCCCAAGGCCTCAAACCTCCTTCTTCCAAGCTCCGCCAGCTCCACACTTACGCCTTAG TCTGGATCAAAGCCTCCACCAAGCTCCGCTCCCAGATCGATCGCGTCGGCGGCCAGAACCCAACCTGGAACGACCGCTTCCTCTTCAAGGTCTCCCCGGC CTTCCTCTCCAGCGAAACCTCCGGCGTCTCCGTCGAGATCTACTCCGTCGGTTATCTCCGCGACACGGTCATCGGCACTGTCAGATTCCTCCTCAGCAAC CTCTCCCTCTCCTCCTCACCGGTTGACACACCTTCCTTCACCGCTCTCCAGATCCGCCGCCCTGCCTCCGGCCGCTGCCACGGTGTCCTCAACGTAGGCG CCACCGCCATCGACGCATCCGATTTCGCTGCGTGGAAGGGAGAATCTGCGATCGGATACCGTGACCTGATGGGGGACGGAGGCAGCAACACTGATCGACG GAGCAGTCACCGCATCCGCCGTCGCGATAGGGTTTCTTCCAAGGAGTCAATTTCGTCGCTGCCGGAGGATCGGGAGGGTAGTTCTTGCTGCTACGAGTCC GGTGAGCTGTCCGATGGAACTGATTCGACTACCTCTTCGTCTTCCAACGCGTCGGCGGTGCTGAAGGATTTGAGCAAGCTCCAACAATTGGCGGGAAACA GTCACCTCAGGGCTTCTTCAGACGGCGGAATGCTTTGCGGGTTGCTGATGCAGCGGAGGCTCCGTTTCTGCAAGTCCGACCCGAATCTGAGAGACCCGGA CTACAGTGGGTCCGAAAAGGAGAACTAA
AA sequence Show only first row Show all	>Lus10002155 pacid=23181301 polypeptide=Lus10002155 locus=Lus10002155.g ID=Lus10002155.BGIv1.0 annot-version=v1.0 MEEESKILEINLISAQGLKPPSSKLRQLHTYALVWIKASTKLRSQIDRVGGQNPTWNDRFLFKVSPAFLSSETSGVSVEIYSVGYLRDTVIGTVRFLLSN LSLSSSPVDTPSFTALQIRRPASGRCHGVLNVGATAIDASDFAAWKGESAIGYRDLMGDGGSNTDRRSSHRIRRRDRVSSKESISSLPEDREGSSCCYES GELSDGTDSTTSSSSNASAVLKDLSKLQQLAGNSHLRASSDGGMLCGLLMQRRLRFCKSDPNLRDPDYSGSEKEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01200			Calcium-dependent lipid-bindin...		Lus10002155 [exp]	0	1
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10013296 [exp]	6.2	0.8724
AT1G32860			Glycosyl hydrolase superfamily...		Lus10001660 [exp]	6.3	0.8478
AT1G67330			Protein of unknown function (D...		Lus10006415 [exp]	7.2	0.8591
AT5G02420			unknown protein		Lus10037925 [exp]	9.9	0.8410
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	12.3	0.8665
AT5G58900	MYB		Homeodomain-like transcription...		Lus10018209 [exp]	12.8	0.7909
AT4G13990			Exostosin family protein (.1)		Lus10006694 [exp]	15.2	0.8219
AT1G64700			unknown protein		Lus10017341 [exp]	16.0	0.8431
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10021567 [exp]	17.1	0.8642
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Lus10031830 [exp]	17.9	0.8299

Compare expression of checked genes

Lus10002155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.