Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65660 101 / 2e-28 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039633 [exp] 187 / 1e-62 AT5G65660 147 / 1e-46 hydroxyproline-rich glycoprotein family protein (.1) Lus10019240 [exp] 115 / 5e-31 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10028220 [exp] 79 / 1e-19 AT5G65660 100 / 3e-28 hydroxyproline-rich glycoprotein family protein (.1) Lus10042927 [exp] 70 / 3e-16 AT5G65660 95 / 6e-26 hydroxyproline-rich glycoprotein family protein (.1) Lus10028221 [exp] 59 / 4e-12 AT5G65660 66 / 1e-14 hydroxyproline-rich glycoprotein family protein (.1) Lus10032818 [exp] 58 / 9e-12 AT5G65660 84 / 7e-22 hydroxyproline-rich glycoprotein family protein (.1) Lus10042928 [exp] 55 / 2e-10 AT5G65660 66 / 8e-15 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G055500 [exp] 102 / 1e-28 AT5G65660 114 / 2e-33 hydroxyproline-rich glycoprotein family protein (.1) Potri.002G108100 [exp] 99 / 1e-27 AT5G65660 95 / 6e-26 hydroxyproline-rich glycoprotein family protein (.1) Potri.011G045900 [exp] 39 / 0.0002 AT1G11120 133 / 2e-40 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002158 pacid=23154561 polypeptide=Lus10002158 locus=Lus10002158.g ID=Lus10002158.BGIv1.0 annot-version=v1.0 ATGGAGAGCCCCGATCTTTCTCCCCCGCAACACATCGACGCTTCCAGGCCTTCTCTTGGCTTCCCCCTAGGCACTGCTCTCCTTCTCATCATCATCTTCA GCTTGAGCGGCATCTTCTCCTGCTGCTACCACTGGGATAAGCTCAGGTCTCTCCGCGGACGAGGTGGTTATTCTGATGATTCTCACCACGACATTGAAGC TGCTCATCCCCCCTTCAAACCCAACCTCCCCCACTTGGATGTGAAGCAGAATCGGAGGGAGAGCCTGACTGTGGTGATGCCCGGAGATCAGATTCCCAAG TTTATAGCATTGCCCTGTCCGTGCGAGCCAGCCAGAGCCGAGAGAGTGGCGGTCAAAGTGGACAAGCCTCCAAAGCCTCCGCCGATAGCGGTGCCTCTCT ATTAA
AA sequence Show only first row Show all	>Lus10002158 pacid=23154561 polypeptide=Lus10002158 locus=Lus10002158.g ID=Lus10002158.BGIv1.0 annot-version=v1.0 MESPDLSPPQHIDASRPSLGFPLGTALLLIIIFSLSGIFSCCYHWDKLRSLRGRGGYSDDSHHDIEAAHPPFKPNLPHLDVKQNRRESLTVVMPGDQIPK FIALPCPCEPARAERVAVKVDKPPKPPPIAVPLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65660			hydroxyproline-rich glycoprote...		Lus10002158 [exp]	0	1
AT5G43180			Protein of unknown function, D...		Lus10025134 [exp]	1.0	0.8777
AT1G07710			Ankyrin repeat family protein ...		Lus10003748 [exp]	3.5	0.8679
AT2G39010		PIP2E, PIP2;6	PLASMA MEMBRANE INTRINSIC PROT...		Lus10021475 [exp]	4.0	0.8692
AT2G20230			Tetraspanin family protein (.1...		Lus10022841 [exp]	4.5	0.8528
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Lus10004645 [exp]	9.0	0.8049
AT4G12410			SAUR-like auxin-responsive pro...		Lus10004337 [exp]	9.4	0.7331
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10002705 [exp]	9.9	0.7966
AT2G27285			Coiled-coil domain-containing ...		Lus10039072 [exp]	10.5	0.8271
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10034148 [exp]	14.0	0.8143
AT1G49420			Heavy metal transport/detoxifi...		Lus10038786 [exp]	15.9	0.7877

Compare expression of checked genes

Lus10002158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.