Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53440 159 / 3e-43 Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039632 [exp] 600 / 0 AT3G53440 186 / 5e-53 Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G280800 [exp] 216 / 2e-64 AT3G53440 159 / 9e-43 Homeodomain-like superfamily protein (.1.2) Potri.018G000700 [exp] 213 / 1e-63 AT3G53440 200 / 1e-58 Homeodomain-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002159 pacid=23154562 polypeptide=Lus10002159 locus=Lus10002159.g ID=Lus10002159.BGIv1.0 annot-version=v1.0 ATGTCCAGGCGGCGAAAAAACATTGACTCACCCACCGCCGTCGAACGAGGCCAACCCCGCCAGCAAGATCTTCATTTGCGTCGATCTCCACGATTTCTCA GCAGTAAAACTCCAGATCCAAGCACCCCCAACAGCGAACTCTCAAGCGATTGCAGAAATTCCAGACGCAAGCAACGAGCTGGATCAAGAGGAATCTCTTC TGTTCCTGGGTTTTCTGATTCCGGGTCGTCGAGTCCGGACAGTGTGTTGCCGGAAAACTCGGTTCTTCGTCGGTCTGCAAGGCTTTCATTGTTGGGAACA AAACTGGAGAAGATCAGGAAAAATACTGGAAAGAATGGGTCTAGCTCTCTGGGAGGAACGGTGTTGGGGCTTGAAGCGGAAGGAGGTCCAAAAATCTGTG AAAATGTCGGAAAGAATAGGTCTCTCGCTAGGGGGAGAAAAGTCTTGGGTCTGGAAGCTGAGAGAGCTCCAAATGTTTGTGAAGATGTGAAAGAGAGTAA GATTACTGGTAAGAGGAAAAGGAATGATGAATGCTCTGAAAGGGAAGAGCCTAGGATTCTTAGGAAGAAGAATGTCAAAGTCCACAGAGGGACTGAATGT GTCAATGGATGGACAAGGGAGCAAGAATTGGCATTACAGAGAGCTTATTTCTCCGAGAAACCCACCCCTCATTTCTGGAAGAAAGTTGCAAACATGGTTC CTGGAAAGTCTGCACAGGATTGTTTTGATAAAGTACACTCCGAGGATGCAACTCCACCTCAACCTATACGTAGATCAAGGGCAAAAAAAGTAAACTCTTC TCCTATTGGATCGCTTTCACTTTCTGCTAGCAAAATACTGGATCCCTGTGGGAAGACGCTTAAGCGGTGTTCCACAAGCCAAAAGCAACATATGGCACAG AAGACTGTGAGACAGTTATTGGAAAAGCATAATCAGAGGGACCAAGTTCCCGAAGCAGATCTATTTTCTCTTCTGGAACCATGCGCTCAAGATTTTCAGC CATCGACTCCAAAGAATATGAAGCTGTCTCTTGAAAAGTTATCTGAGAGGTCATCTTCTGGACAAAAGAAGCCTCTTTCAAGATTCAGTAACTCACGACA GCCGGATATTGTTACTCCTCCCGTACTGAAGAAGGTGAAAGACAGGTTCTTGCATGAAAAGTATATTGACCAATTACACTGCAGAGAAGCAAAGCGGAAG AAAGCAGCATCTTCCCAGGTAAAGAAATTTACTGCAGGAAAAGAGAATGTGGCAGTGGTACAGAGTAACAACGTTCAGAATGTAGATGCAATAAAAGCTG CTAAAAATGCTCTAACTTTTGAAGCGAGGGATGCAATAGATCAACTTCGTCGCCTCCAATCCGATCAAAACAGCGACGTTTCTGATTGTAACAGTGATAG TGTTGATGAAGAAGATGATATAGCTTGA
AA sequence Show only first row Show all	>Lus10002159 pacid=23154562 polypeptide=Lus10002159 locus=Lus10002159.g ID=Lus10002159.BGIv1.0 annot-version=v1.0 MSRRRKNIDSPTAVERGQPRQQDLHLRRSPRFLSSKTPDPSTPNSELSSDCRNSRRKQRAGSRGISSVPGFSDSGSSSPDSVLPENSVLRRSARLSLLGT KLEKIRKNTGKNGSSSLGGTVLGLEAEGGPKICENVGKNRSLARGRKVLGLEAERAPNVCEDVKESKITGKRKRNDECSEREEPRILRKKNVKVHRGTEC VNGWTREQELALQRAYFSEKPTPHFWKKVANMVPGKSAQDCFDKVHSEDATPPQPIRRSRAKKVNSSPIGSLSLSASKILDPCGKTLKRCSTSQKQHMAQ KTVRQLLEKHNQRDQVPEADLFSLLEPCAQDFQPSTPKNMKLSLEKLSERSSSGQKKPLSRFSNSRQPDIVTPPVLKKVKDRFLHEKYIDQLHCREAKRK KAASSQVKKFTAGKENVAVVQSNNVQNVDAIKAAKNALTFEARDAIDQLRRLQSDQNSDVSDCNSDSVDEEDDIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53440			Homeodomain-like superfamily p...		Lus10002159 [exp]	0	1
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	8.6	0.9238
AT1G21730			P-loop containing nucleoside t...		Lus10018145 [exp]	10.4	0.9096
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10007337 [exp]	12.6	0.8951
AT1G03470			Kinase interacting (KIP1-like)...		Lus10040904 [exp]	13.9	0.9158
AT3G42170			BED zinc finger ;hAT family di...		Lus10032337 [exp]	16.1	0.9091
AT5G66230			Chalcone-flavanone isomerase f...		Lus10025961 [exp]	25.3	0.9077
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10009434 [exp]	25.8	0.9055
AT5G37010			unknown protein		Lus10007363 [exp]	26.9	0.8875
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002033 [exp]	29.5	0.9018
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	31.6	0.8749

Compare expression of checked genes

Lus10002159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.