Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65640 226 / 1e-72 bHLH bHLH093 beta HLH protein 93 (.1.2) AT5G10570 189 / 1e-58 bHLH bHLH061 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12860 117 / 3e-30 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 116 / 2e-29 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT4G09820 69 / 4e-13 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G16910 68 / 1e-12 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29930 58 / 7e-10 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G46510 59 / 1e-09 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT2G28160 56 / 5e-09 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT4G17880 55 / 2e-08 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039631 [exp] 423 / 3e-151 AT5G65640 230 / 3e-74 beta HLH protein 93 (.1.2) Lus10043199 [exp] 112 / 8e-28 AT3G26744 387 / 1e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10032542 [exp] 112 / 9e-28 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10003488 [exp] 62 / 7e-11 AT4G37850 212 / 6e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039639 [exp] 62 / 8e-11 AT4G37850 191 / 3e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012457 [exp] 61 / 2e-10 AT4G37850 188 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006951 [exp] 60 / 2e-10 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10042572 [exp] 58 / 4e-10 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007618 [exp] 56 / 4e-09 AT4G21330 141 / 2e-42 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G108400 [exp] 222 / 5e-71 AT5G65640 233 / 2e-74 beta HLH protein 93 (.1.2) Potri.015G105200 [exp] 121 / 3e-31 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.012G106000 [exp] 118 / 3e-30 AT3G26744 339 / 9e-111 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.009G136300 [exp] 74 / 1e-14 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G189600 [exp] 67 / 1e-12 AT1G10610 223 / 3e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G041500 [exp] 61 / 3e-11 AT2G16910 109 / 7e-28 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G208600 [exp] 62 / 9e-11 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 62 / 1e-10 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G074900 [exp] 60 / 2e-10 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.002G042000 [exp] 59 / 1e-09 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002160 pacid=23154563 polypeptide=Lus10002160 locus=Lus10002160.g ID=Lus10002160.BGIv1.0 annot-version=v1.0 ATGGCTACAACAACCACCACCATCATTCCTCCTCCTCCTCTTCCATTTCTCCCCTTTGATTTCACTGACCAATTGCATGCTTCTTCTTCTTACCCCTTCT TTGGTGATGGTACTGGGTTCCACATTGATCACAATTCATCACCTCCATTACTCCAGCAGGATGACCCCAACAACTACCAACCAAACATGATAGTTGAGGA GGAGGAGGAAGTCAATAATGAGGAGATGGTAATGAGCTGCTGCAAAGCAGAGGAGGAATTAGGTGTAGAGCAAAGTGAGCAACTTGTTCATCATTTACAA GCTTCTTCCATGGCTATTCAGGGGTTTTGTGGGGAGATCAAGAAGAGCAATAATAACAAGTCAAAGAGGGTTGAAGGGCAGCCTTCCAAGAATCTAATGG CTGAGAGGAGAAGAAGGAAGAGACTCAATGACAGGCTCTCTATGTTGAGATCAATCGTCCCTAAGATCAGCAAGATGGACAGGACTTCAATCCTTGGAGA CACTATAGATTATGTGAAGGAACTTCTTGAAAAAATCAACAGATTGCAAGAAGAGGAGGAAGGAGAAGAGAATGATCAAGTGAAGTTGATTGCCAACTTG AATGACCATAAACCAACTGAACTTCTTGTCAGAAACTCCCCTAAATTTAGTGTAGAGAGGAGAGAAATGGACACCAGGGTGGATATCTGCTGTGCACCAA AGCCAGGACTGCTGCTTTCAACTGTGAATACAATTGAAGCATTAGGCCTTGAGATTCAGCAGTGTGTCATTAGCTGCTTCAATGACTTTTCATTGCAGGC TTCTTGCTCCAAGGCATGTTGA
AA sequence Show only first row Show all	>Lus10002160 pacid=23154563 polypeptide=Lus10002160 locus=Lus10002160.g ID=Lus10002160.BGIv1.0 annot-version=v1.0 MATTTTTIIPPPPLPFLPFDFTDQLHASSSYPFFGDGTGFHIDHNSSPPLLQQDDPNNYQPNMIVEEEEEVNNEEMVMSCCKAEEELGVEQSEQLVHHLQ ASSMAIQGFCGEIKKSNNNKSKRVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYVKELLEKINRLQEEEEGEENDQVKLIANL NDHKPTELLVRNSPKFSVERREMDTRVDICCAPKPGLLLSTVNTIEALGLEIQQCVISCFNDFSLQASCSKAC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Lus10002160 [exp]	0	1
AT5G19730			Pectin lyase-like superfamily ...		Lus10043035 [exp]	1.0	0.8954
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10037391 [exp]	4.0	0.7932
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008269 [exp]	14.8	0.8482
AT4G36970			Remorin family protein (.1)		Lus10027302 [exp]	24.7	0.8133
AT5G15550			Transducin/WD40 repeat-like su...		Lus10037439 [exp]	29.0	0.7833
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10015292 [exp]	29.0	0.7900
AT3G05470			Actin-binding FH2 (formin homo...		Lus10029897 [exp]	29.1	0.8103
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10043361 [exp]	33.7	0.7673
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10022129 [exp]	35.5	0.7848
AT4G23440			Disease resistance protein (TI...		Lus10024640 [exp]	37.5	0.7525

Compare expression of checked genes

Lus10002160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.