Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25360 174 / 3e-56 unknown protein AT4G32342 136 / 4e-41 unknown protein AT1G15350 122 / 8e-36 unknown protein AT3G15770 109 / 8e-31 unknown protein AT5G03440 74 / 2e-17 unknown protein AT3G54880 73 / 4e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030101 [exp] 86 / 1e-22 AT5G25360 79 / 2e-20 unknown protein Lus10005466 [exp] 77 / 1e-18 AT5G25360 99 / 6e-28 unknown protein Lus10013824 [exp] 77 / 2e-18 AT3G54880 108 / 1e-31 unknown protein Lus10026537 [exp] 61 / 6e-13 AT5G03440 97 / 5e-28 unknown protein Lus10038690 [exp] 46 / 1e-06 AT3G54880 81 / 1e-20 unknown protein Lus10037957 [exp] 39 / 0.0004 AT3G54880 73 / 1e-17 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G068600 [exp] 214 / 9e-72 AT5G25360 194 / 9e-64 unknown protein Potri.018G130900 [exp] 197 / 4e-65 AT5G25360 140 / 8e-43 unknown protein Potri.006G254000 [exp] 169 / 3e-54 AT5G25360 197 / 3e-65 unknown protein Potri.018G027800 [exp] 160 / 3e-50 AT5G25360 182 / 1e-58 unknown protein Potri.001G192700 [exp] 147 / 9e-46 AT5G25360 169 / 1e-54 unknown protein Potri.008G034600 [exp] 81 / 5e-20 AT3G54880 120 / 8e-37 unknown protein Potri.010G227800 [exp] 74 / 2e-17 AT3G54880 123 / 7e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002164 pacid=23180823 polypeptide=Lus10002164 locus=Lus10002164.g ID=Lus10002164.BGIv1.0 annot-version=v1.0 ATGGTGACACGAGCTAACAACTCTATCTGTTCTTGGATCCGTCACTTTCTGGCTTGTATAGGTGGGTGTTTTGGATGCTGTGCTAAACCTGCACCAATAA TCGCAGTGGATGAGCCATCAAAAGGATTGCACATACAAGGCAAGGCAGTGAAGAAGCCTAGTTTGTTGGATGGTTTCTGGAGTAGTAGCTCATGTGATTT GGACAATATTGCCATTCACTCACAAAGAACTGTCTCTTCAGTCAGTGCTTCACATAAAAACATTGGCACTAGTGCCACGGGCGTCAGTACAGACTTTGTC AACCATGGTCTCCTTCTCTGGCAGCAAAGCAGGATCCATTGGACTGGAAGAGGAGAATCTACCACAAGTCAAGTCAATCAAGCACCTAGATCGCGGCCCA GATGGAATGCTAGTTATGAAAGTTTGCTTGGGAGCAGAAACCGTTTTACTCGGCCTGTCCCACTCTCTGAAATGGTAGATTTTCTAGTGGATGTATGGGA GCAGGAAGGGTTGTATGATTAA
AA sequence Show only first row Show all	>Lus10002164 pacid=23180823 polypeptide=Lus10002164 locus=Lus10002164.g ID=Lus10002164.BGIv1.0 annot-version=v1.0 MVTRANNSICSWIRHFLACIGGCFGCCAKPAPIIAVDEPSKGLHIQGKAVKKPSLLDGFWSSSSCDLDNIAIHSQRTVSSVSASHKNIGTSATGVSTDFV NHGLLLWQQSRIHWTGRGESTTSQVNQAPRSRPRWNASYESLLGSRNRFTRPVPLSEMVDFLVDVWEQEGLYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25360			unknown protein		Lus10002164 [exp]	0	1
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030890 [exp]	1.7	0.7615
AT1G12390			Cornichon family protein (.1)		Lus10004320 [exp]	4.2	0.8146
AT2G02400			NAD(P)-binding Rossmann-fold s...		Lus10042399 [exp]	8.1	0.7361
AT1G28250			unknown protein		Lus10014006 [exp]	8.2	0.7916
AT4G32000			Protein kinase superfamily pro...		Lus10001939 [exp]	9.2	0.7585
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Lus10042141 [exp]	12.7	0.6804
AT1G28250			unknown protein		Lus10015429 [exp]	14.1	0.7464
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10006623 [exp]	14.9	0.6974
					Lus10042417 [exp]	21.2	0.7284
AT3G07750			3'-5'-exoribonuclease family p...		Lus10006382 [exp]	22.6	0.7537

Compare expression of checked genes

Lus10002164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.