Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25490 655 / 0 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 624 / 0 EBF2 EIN3-binding F box protein 2 (.1) AT4G15475 160 / 7e-42 F-box/RNI-like superfamily protein (.1) AT5G27920 127 / 1e-30 F-box family protein (.1) AT5G23340 115 / 1e-27 RNI-like superfamily protein (.1) AT5G01720 93 / 2e-19 RNI-like superfamily protein (.1) AT3G07550 77 / 6e-15 RNI-like superfamily protein (.1.2) AT1G77000 77 / 7e-15 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT1G80570 74 / 1e-13 RNI-like superfamily protein (.1.2.3) AT1G21410 72 / 2e-13 SKP2A F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030102 [exp] 1148 / 0 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 656 / 0 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 656 / 0 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10012764 [exp] 153 / 2e-38 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10012214 [exp] 114 / 5e-26 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 106 / 2e-24 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 106 / 2e-24 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10001264 [exp] 106 / 1e-23 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10034013 [exp] 102 / 4e-22 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G130800 [exp] 894 / 0 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G068500 [exp] 888 / 0 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G254100 [exp] 743 / 0 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 737 / 0 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.013G013100 [exp] 128 / 6e-31 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G022600 [exp] 125 / 6e-30 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.006G105400 [exp] 121 / 1e-28 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 117 / 3e-27 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 103 / 5e-23 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 96 / 4e-21 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002165 pacid=23180826 polypeptide=Lus10002165 locus=Lus10002165.g ID=Lus10002165.BGIv1.0 annot-version=v1.0 ATGTATTCTAGGGGTTCATTTCGTGCATGTCCTATGGACATGGCTCAGTTCTGTTCCGTTGGTTCATACGGAGATGTCTACAGCCCAGCTTGCAAGAGGG CTCGCATTAGTACCTCATTTTCTTTTGCCTCCGCCGACGAAATCAACAGAAAACCATCAATTGATCTCCTCCCAGATGAGTGTCTCTTTGAGATTCTCAG GAGGGTCCCCGGAGGCAAAGAGAGGGGATCTTGTGCTTCCGTGTCCAAGCGGTGGCTTATGGTGTTGAGCAGCATAAAGAGAGCTGAAATTTGCAAGGTA GCAGTCGTCAAGGGTTCTGATGATGTGGAGATGTTGTCTGGTGATGAAAACGTGGAGGTTGAAGATGATGGCTGTCTCACTAGGTCTCTAGAAGGAAGGA AAGCAACGGATATTAGACTTGCTGCTATTGCTGTTGGCACAAGCAGCCGTGGAGGTCTTGGGAAACTTTTCATTCGTGGGAATAACTCTGGTCGTGGAGT AACTGATCTTGGTCTATCAGCAATAGCCTGTGGCTGCCCTTCCCTCAGAACTCTTTCTCTGTGGAATGTTCCTTTGGTTGGCGATCATGGGTTGTCTGAG ATTGCTAAGGAATGCCATTCCCTGGAAAAGCTTGATTTTTCCCATTGTCCTTCAATTTCTGATAAGGGTTTGGCTGCAATCGCTCAGAAGTGCAAAAATT TGTCGGCTTTGAGTATTGAATCCTGCTCAAACATCGGTAATGCGGGTTTAGAAGTGATTGGGAAGTTATGTCCCAAACTTCAATCTGTTTCCATCAAAGA TTGCCCCCTTGTTGGAGATCATGGTCTATCAGCTCTATTCTCGTCAGCTCCTGCGTTATCAAAGGTTAAGATTCAGTCATTGAACATCACAGATTTCTCT CTTGCAGTAATTGGACATTATGGCAAGGCTGTTACTAGCCTTGTCCTTGGTGGTCTCCAGTATGTCAGCGAGAAGGGCTTTTGGGTCATGGGAAGTGCTA AGGGCTTACAGAAGTTGATCTCTTTGACAATCACTTCTTGCAGGGGAACAACAGATCTCGGTCTTGAAGCTATTGCCAAAGGTTGCTTGAACCTCAAACA GATTTGCATTCGCAAATGTAGCTTTGTCTCTGATAATGGATTGATCAATTTTACCAAGGCAGCAGCAGTAGCTTCTCTCGAGAGCTTGCAGCTGGAGGAG TGTAACAGGGTTACTGAATTGGGGATCATTGGTGCAATCGCAAACTGTGGAGCTAAACTGAAAACACTTAGCCTAGTGAGGTGCATGGGGATCAAGGATA CATCTTCAGGAATTCCATTACCCTCTGAATGTAGCTCCCTTCGCTCCCTTTCAATCAAGAGCTGCCCCGGTTTTGGCAACCTTGGGTTGGCTTTGGTAGG GAAGTTATGCCCACAACTTCAGCATCTGGATTTATGTGGGCTAAGTGGAATTACCGATGCTGGGCTTCTACCACTTTTGGAGAGTAGCAAAGCTGGTCTG GTGAAGGTTAACCTCAGTGAATGTCTGAACTTGACAGATGACGTGGTCTCGGCCTTGGCCAGGCTACACGGTGGAACAACACTCGAGGTATTGAATCTTG ATGGTTGCAGGAAGATCACTGACGCTAGTTTGGCAGCTATTGCCGAACACTGCTTATTCCTGAGCGATCTAGATGTGTCCAAGTGTTCAATTTCAGATTC AGGCATCAGTTACCTGTCGAGTTCGGAGCAGCTAAACCTGCAAGTCCTTTCAATGTCAAGTTGCTCTGAAGTTTCCAACAAGGCATTGCCTTGCCTAAAG AGAATTGGAAGGACCCTTGTGGGTTTAAATCTCCAACATTGCAATTCCATTAGCAGCAAGACGATTGAGCTTTTGGTGGGAAGCTTGTGGAGATGTGACA TCCTCTCCTAA
AA sequence Show only first row Show all	>Lus10002165 pacid=23180826 polypeptide=Lus10002165 locus=Lus10002165.g ID=Lus10002165.BGIv1.0 annot-version=v1.0 MYSRGSFRACPMDMAQFCSVGSYGDVYSPACKRARISTSFSFASADEINRKPSIDLLPDECLFEILRRVPGGKERGSCASVSKRWLMVLSSIKRAEICKV AVVKGSDDVEMLSGDENVEVEDDGCLTRSLEGRKATDIRLAAIAVGTSSRGGLGKLFIRGNNSGRGVTDLGLSAIACGCPSLRTLSLWNVPLVGDHGLSE IAKECHSLEKLDFSHCPSISDKGLAAIAQKCKNLSALSIESCSNIGNAGLEVIGKLCPKLQSVSIKDCPLVGDHGLSALFSSAPALSKVKIQSLNITDFS LAVIGHYGKAVTSLVLGGLQYVSEKGFWVMGSAKGLQKLISLTITSCRGTTDLGLEAIAKGCLNLKQICIRKCSFVSDNGLINFTKAAAVASLESLQLEE CNRVTELGIIGAIANCGAKLKTLSLVRCMGIKDTSSGIPLPSECSSLRSLSIKSCPGFGNLGLALVGKLCPQLQHLDLCGLSGITDAGLLPLLESSKAGL VKVNLSECLNLTDDVVSALARLHGGTTLEVLNLDGCRKITDASLAAIAEHCLFLSDLDVSKCSISDSGISYLSSSEQLNLQVLSMSSCSEVSNKALPCLK RIGRTLVGLNLQHCNSISSKTIELLVGSLWRCDILS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002165 [exp]	0	1
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10030102 [exp]	1.0	0.9470
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10013415 [exp]	2.0	0.8821
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	4.9	0.8646
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10042549 [exp]	4.9	0.8332
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038283 [exp]	7.7	0.8243
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	7.7	0.8480
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10012089 [exp]	8.4	0.8203
AT1G18480		AtSLP2	Shewenella-like protein phosph...		Lus10038865 [exp]	10.2	0.8242
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10028267 [exp]	11.8	0.8036
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10029542 [exp]	15.6	0.7510

Compare expression of checked genes

Lus10002165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.