Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20190 176 / 2e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80130 158 / 3e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32340 132 / 5e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G17940 126 / 3e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04530 97 / 4e-23 TPR4 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29670 83 / 2e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07280 80 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G47080 67 / 3e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030103 [exp] 455 / 9e-163 AT5G20190 179 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019409 [exp] 250 / 8e-83 AT5G20190 164 / 1e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043266 [exp] 239 / 1e-78 AT5G20190 162 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002013 [exp] 139 / 4e-39 AT4G32340 152 / 5e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024949 [exp] 129 / 5e-34 AT4G17940 125 / 8e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022877 [exp] 124 / 5e-33 AT4G17940 121 / 5e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014468 [exp] 121 / 5e-31 AT1G04530 177 / 1e-51 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023721 [exp] 121 / 6e-31 AT1G04530 171 / 4e-49 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000257 [exp] 120 / 1e-30 AT1G04530 179 / 3e-52 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G130100 [exp] 251 / 2e-82 AT5G20190 180 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130300 [exp] 234 / 6e-76 AT5G20190 166 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G068200 [exp] 224 / 8e-72 AT5G20190 167 / 6e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G254300 [exp] 149 / 1e-43 AT4G32340 157 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G256900 [exp] 129 / 3e-34 AT4G17940 125 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G140500 [exp] 125 / 7e-34 AT4G17940 196 / 9e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G172200 [exp] 113 / 4e-28 AT1G04530 137 / 1e-36 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G065400 [exp] 106 / 5e-26 AT1G04530 160 / 5e-46 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044200 [exp] 81 / 5e-17 AT2G29670 484 / 5e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G250100 [exp] 81 / 1e-16 AT2G29670 499 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002166 pacid=23180825 polypeptide=Lus10002166 locus=Lus10002166.g ID=Lus10002166.BGIv1.0 annot-version=v1.0 ATGCTTCTACGTAGCTCGTCTACTCCGATACTTAAATCTTGGATCCCACACTCCAAAGATCCACAGCCATCGCCGGAACCTGAATTTTCCCGCCAAATTA GGAGGACACAATCTATAACCCTAACCGCCTCGTCTTCCAGCCACAATTCTCCCTCTTCGTTCTCTCCCCACGGCGATTCCTTTAGGAAGATGACGAGGGC GCTGTCGGAGGCTGATCTCCGGGAGCCCAAGAGGAAATCAACAAGCGGGTTATTACTGAACGGCGTCTCCATCGAGGAGAAGGACGAGGAAGAGGAAGAA TTGGCAGCCTGGGGTTGCGGGTTTTTCCTGGGATCAAATGGGTTGGGCGAAAGTTACAACGCCGAGAGTGTGTTATCGACGCTTTCGGTCGGCGACGGAG CTTCTGGAGGCGGGGGGAAAATCGGGACTGGCGGCGGTAGTCCCGGCGGCGGAGATTGGAGCTCGGAATTCTGGGATTCAAATTACAAGACGGAGAGCTA CTACGAAAAGATGATCGAGGCGAATCCTGGGAATTCCCTCCTCCTTACGAATTACGCAAAGTTCTTGAAAGAGGTTCGTGGGGATTTGGTCAGGGCAGAA GAGTATTGTGGAAGAGCAATCCTGGAGAATCCGAACAATGGCGATGTTCTGTCCATGTACGCTGATTTGGTATGGAAGAGCCACAAGGATTCCTCTCGAG CTGAAACCTATTTCAATCGAGCTGTTGCGGCTTCCCCTGAAGATTGCTATGTTCTTGCTTCATATGCTAGTTTCCTGTGGGATTCTGATGATGATGAAGA AGAAGAACAAGAAGGGGTAAAGGGAACGGATGGTATACAAGAGATGAACAAATTGTCATCACCGAATTTCTTCCATGGAGTTTCACCTCCGTATCCTCCT CTGGCTGCTGCTTCTTAA
AA sequence Show only first row Show all	>Lus10002166 pacid=23180825 polypeptide=Lus10002166 locus=Lus10002166.g ID=Lus10002166.BGIv1.0 annot-version=v1.0 MLLRSSSTPILKSWIPHSKDPQPSPEPEFSRQIRRTQSITLTASSSSHNSPSSFSPHGDSFRKMTRALSEADLREPKRKSTSGLLLNGVSIEEKDEEEEE LAAWGCGFFLGSNGLGESYNAESVLSTLSVGDGASGGGGKIGTGGGSPGGGDWSSEFWDSNYKTESYYEKMIEANPGNSLLLTNYAKFLKEVRGDLVRAE EYCGRAILENPNNGDVLSMYADLVWKSHKDSSRAETYFNRAVAASPEDCYVLASYASFLWDSDDDEEEEQEGVKGTDGIQEMNKLSSPNFFHGVSPPYPP LAAAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10002166 [exp]	0	1
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10004289 [exp]	2.8	0.9280
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10040191 [exp]	3.3	0.9317
AT5G42760			Leucine carboxyl methyltransfe...		Lus10000713 [exp]	5.2	0.9183
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10025378 [exp]	5.7	0.9175
AT3G23880			F-box and associated interacti...		Lus10023238 [exp]	8.2	0.8838
AT1G18265			Protein of unknown function, D...		Lus10035638 [exp]	10.2	0.9005
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10022375 [exp]	10.8	0.8875
AT4G02405			S-adenosyl-L-methionine-depend...		Lus10015003 [exp]	11.7	0.8965
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10028299 [exp]	14.7	0.9159
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10020508 [exp]	18.8	0.9012

Compare expression of checked genes

Lus10002166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.