Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15790 118 / 2e-31 MBD11, ATMBD11 methyl-CPG-binding domain 11 (.1) AT1G15340 111 / 9e-28 MBD10 methyl-CPG-binding domain 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030108 [exp] 291 / 5e-97 AT3G15790 145 / 5e-41 methyl-CPG-binding domain 11 (.1) Lus10043263 [exp] 166 / 3e-49 AT3G15790 141 / 1e-40 methyl-CPG-binding domain 11 (.1) Lus10019406 [exp] 159 / 7e-47 AT1G15340 137 / 3e-39 methyl-CPG-binding domain 10 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G129700 [exp] 120 / 5e-32 AT1G15340 134 / 7e-37 methyl-CPG-binding domain 10 (.1.2) Potri.006G067700 [exp] 116 / 4e-30 AT1G15340 137 / 2e-37 methyl-CPG-binding domain 10 (.1.2) Potri.001G192300 [exp] 45 / 9e-06 AT1G15340 61 / 9e-12 methyl-CPG-binding domain 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Lus10002168 pacid=23180822 polypeptide=Lus10002168 locus=Lus10002168.g ID=Lus10002168.BGIv1.0 annot-version=v1.0 ATGGCGAGCTCGGTTGAGAATCAAGACAATACTACTACTCCAATGAAAGACGACGAGGGTTTCTCTGTCGAGCTTTCTGCACCTCCCGGCTGGAAAAAAA TGTTCTCACCCAAGAAGAAAAAGAGTGAGATCACATTCATTGCCCCAACAGGGGAGGAAATCATCGGTAAACGACAGTTGGATCAGTATCTTAAAGCACA TCCCGGTGGTCTGGCAGCAGCTGAGTTCGATTGGAGCACTGGCGAGACCCCAAGACGATCGGCAAGAATCAGTGAGAAGGTGAAGGCGACTCCATCTCCG AATGAGCCCTTAAAGAAGAGAGGCAAGAAGTCACCGGCTACCAAAAAGGAAACCAAAGAAATAGTAATTGGTGATGAAGTAACTAAGGAGGCCAAAGACA TTAATATGGAGAAAGGTGGAGAAACTAACAAGGATGGTGCAGAAACTAAGCAGGATGGTGCTGAGGAGGCCAAAGACATTAATATGGAGGAAGCTGGAGA AACTAACAAGGATGGTGCTGATCATTCAGAAGCAAAAGAGAATGATGTGAAAGAAAACCAGGATGAGAGTAGAGAAAAAGTTGAAGATCCTGCTGCAAAG CCAGACGCTGCTAATCCTGCTGAAATAATCCAAGTTGGTCAAGATGGAGCTCCATCTCAGAAGGGAACTGCTGAAGCTGTTGATGGTGCAATGGCAAAAA ATGTAGCTGAAAAGGAAGAGGCTAAAGAAGTTGAGGAAAAGGAGGAGCAACCACTGGTTGAGGCAACCATAAATGCAGGGGAGGAGAGAAAGAAAGAAGC TGAAGGAGAGAACAAAGAGCAAACTGATGGAGGGATCCTGGAGAAAGAAGGGGCAAATTGCAGCACTGAAAAGCCTGTTCAAACCGGCATTGGATCAGCG GTTGAGAATGGAAGCCATGCTGCTGCTGGTGGTGCTACTACCTGA
AA sequence Show only first row Show all	>Lus10002168 pacid=23180822 polypeptide=Lus10002168 locus=Lus10002168.g ID=Lus10002168.BGIv1.0 annot-version=v1.0 MASSVENQDNTTTPMKDDEGFSVELSAPPGWKKMFSPKKKKSEITFIAPTGEEIIGKRQLDQYLKAHPGGLAAAEFDWSTGETPRRSARISEKVKATPSP NEPLKKRGKKSPATKKETKEIVIGDEVTKEAKDINMEKGGETNKDGAETKQDGAEEAKDINMEEAGETNKDGADHSEAKENDVKENQDESREKVEDPAAK PDAANPAEIIQVGQDGAPSQKGTAEAVDGAMAKNVAEKEEAKEVEEKEEQPLVEATINAGEERKKEAEGENKEQTDGGILEKEGANCSTEKPVQTGIGSA VENGSHAAAGGATT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10002168 [exp]	0	1
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10030108 [exp]	1.4	0.9395
AT2G27550		ATC	centroradialis (.1)		Lus10004884 [exp]	2.4	0.8869
AT1G11240			unknown protein		Lus10018438 [exp]	3.7	0.8853
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001172 [exp]	4.2	0.9274
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	4.9	0.9030
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10040851 [exp]	5.2	0.8817
AT3G13898			unknown protein		Lus10008387 [exp]	8.7	0.9174
AT5G48905		LCR12	low-molecular-weight cysteine-...		Lus10017233 [exp]	9.2	0.8716
AT4G15620			Uncharacterised protein family...		Lus10012562 [exp]	9.5	0.8700
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10031078 [exp]	10.9	0.8677

Compare expression of checked genes

Lus10002168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.