Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20580 1348 / 0 RPN1A, AtRPN1a 26S proteasome regulatory subunit S2 1A (.1) AT4G28470 1317 / 0 RPN1B, AtRPN1b 26S proteasome regulatory subunit S2 1B (.1) AT4G08140 112 / 2e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039885 [exp] 1600 / 0 AT2G20580 1488 / 0.0 26S proteasome regulatory subunit S2 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014800 [exp] 1365 / 0 AT2G20580 1399 / 0.0 26S proteasome regulatory subunit S2 1A (.1) Potri.007G137200 [exp] 1343 / 0 AT2G20580 1358 / 0.0 26S proteasome regulatory subunit S2 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01851 [flax] [poplar] PC_rep Proteasome/cyclosome repeat
Representative CDS sequence Show only first row Show all	>Lus10002169 pacid=23158728 polypeptide=Lus10002169 locus=Lus10002169.g ID=Lus10002169.BGIv1.0 annot-version=v1.0 ATGGCGCCGGAACTGAACGGTGGTGCTAGTGGCAGCGGCACTAAGAAGGACGACGCTCCGGCCAAGGACCAAAAGAAGAAGGACGACAAGAAGGACGAGG ATCTGTCAGAGGAGGATTTGGCGTTGAAACAGCAGCTTGAATTGTATGTTGAAAGGGTTCAGGATGCTGATCCTGGATTGCAGAAGGTAGCACTGGAGAG TATGAGGCAAGAAATTCGGACCTCAACAAGCTCAATGACTTCCGTACCAAAGCCATTGAAGTTTCTCCGGCCATATTATGGAACGCTAAAAGCGTTTTAC AATACAATGTCTGAATCAGCTCTAAAGAAATACTTGGCCGATATCCTTTCTGTTTTGGCCCTGACCATGTCTGCCGAAGGAGAACGGGAAAGCTTAAAGT ATAGGTTGTTGGGTTCGGAGGGGGACATTGGTTCATGGGGCCATGAATATGTCAGGAACTTGGCTGGAGAAATCGGACAAGAGTATGCCAAAAGACAGGC TGAAGAAGTGACAATCGATGATGTAATGGAGCTTGTACAGCAGATTGTTGCCTTTCATATGAAGCACAATGCTGAACCAGAAGCAGTGGACCTTCTAATG GAGGTCGAAGACCTAGATCTTTTGACTGAGCATGTCGACAGTACTAATTTCAAGAGAACCTGTTTGTACCTCACTAGTGCTGCAAGATACCTCCCTGGGC CCGATGATGTGCTAGTTTTGGATATTGCATACGTGATATACCTAAAGTTTGAGGAATTTGCAAATTGTCTTCAAATTGCCTTGTCTCTTGACAACCTTCA GTATGTGAAGCAGGTTTTTACTTCTTGTGATGACAATCTTCGAAAGAAGCAATTCTGTTACATCCTTGGTAGACAGGGAACAACATTTGAGCTTGATGAA GATATGTGTGCTGATGATGAGGAGAGATACTTAATGCAAGACATCATTAACAATGCCAAGTTAAGTGAAGGTTATCTTGCACTTGCTCGTGATATAGAAG TCATGGAACCGAAATCTCCTGAAGATATCTACAAGGCACATTTACTTGATGGCCGGGCGAGCGCTGGTGCCAGTGTTGATTCAGCAAGACAGAATTTGGC TGCTACATTTGTCAATGCGTTTGTAAATGCGGGATTTGGTCAGGATAAGCTGATGACAGTTCCAGCAGACTCTGCGAGTGGGGGTTCATCTGGAAATTGG CTTTTCAAGAACAAAGAGCATGGAAAAGCCAGTGCTGCAGCAAGTATGGGTATGATTTTGTTGTGGGACGTGGACACTGGTCTTGCTCAACTTGACAAGT ATTTCCATAGCAATGACAACTATGTGATCGCTGGTGCTCTTCTAGGGGTTGGAATTGTTAACTGTAGTGTGAAGAATGACTGTGATCCTGCTCTGGCATT GTTAGCTGATTATGTGGATAAAGAGGATCCATTTATCAGAATTGGTGCAATTATGGGTTTGGGAATTGCATATGCTGGAGCTCAAAATGAACAGATACGC AGCAAATTGACCCCCATACTTAATGATGCCAAAACCCCACTTGACGTAGTTGCTTTCACTGCAATCTCCTTGGGTTTGATATATGTTGGGTCCTGCAATG AAGAGGTTGCACAAGCAATTATATTTGCTCTGATGGACAGAAGTGAATCCGAGTTGCAAGATCCTCTCACGAGATTTTTGCCTCTTGGTCTTGGATTGTT ATACCTTGGGAAGCAGGAAAGTGTTGAGGCTACAGCTGAGGTCTCAAAGACATTTAATGAGAAGATCAGAAAGTATTGTGATATGACCTTACTTTCTTGT GCTTATGCTGGGACTGGAAATGTTCTTAAGGTTCAACACCTTCTGGGGAATTGCGCTCAGCATCTCGAGAAGGGTGAAAACCACCAAGGACCAGCTGTGC TTGGAATTGCAATGGTGGCTATGGCTGAGGAGTTGGGAGTTGAAATGGCAATTCGTTCATTGGAGCATCTGTTGCAGTATGGTGAACAAAACATCCGGAA GTCAGTTCCTTTGGCTCTGGCCCTTCTCTGCATATCAAACCCGAAGGTCAATGTTATGGACACACTAAGCAGACTTAGTCATGATGCTGATGCCGAAGTC GCATCGGCTGCAATCATCGCCTTAGGTCTGATCGGTGCAGGGACCAATAATGCTCGTATTGCTGGCATGCTCCGCAATCTTTCGAGTTATTACTACAAAG ATGCAACGCTTCTCTTCTGTGTGAGACTTGCCCAAGGTCTTGTACATCTAGGCAAGGGCTTGTTGACTCTCAACCCTTACCATTCCGATCGGTCCTTGCT ATCACCTATGGCACTTGCTGGTCTAGTAACCTTCTTGCATGCGTGTCTCGAAATGAAGGCCATGATTTTGGGGAGATATCATATCGTCCTCTACTTCCTC GTCTTAGCAATGCAGCCAAGAATGTTGATGACCGTGGATGAGAACTTGAAGCCTCTGTCCGTACCAGTACGGGTTGGTCAAGCTGTGGACGTAGTCGGTC AGGCTGGAAGGCCGAAGACCATTACTGGTTTCCAGACGCACTCAACACCGGTTCTCTTGGCAGCTGGCGACCGGGCTGAGCTAGCTACTGAGAAGTACAT TCCACTGTCGCCGATCTTGGAAGGATTCGTGATCTTGAAGGAGAATCCGGATTATCGAGAGGAGAGCTAG
AA sequence Show only first row Show all	>Lus10002169 pacid=23158728 polypeptide=Lus10002169 locus=Lus10002169.g ID=Lus10002169.BGIv1.0 annot-version=v1.0 MAPELNGGASGSGTKKDDAPAKDQKKKDDKKDEDLSEEDLALKQQLELYVERVQDADPGLQKVALESMRQEIRTSTSSMTSVPKPLKFLRPYYGTLKAFY NTMSESALKKYLADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIGQEYAKRQAEEVTIDDVMELVQQIVAFHMKHNAEPEAVDLLM EVEDLDLLTEHVDSTNFKRTCLYLTSAARYLPGPDDVLVLDIAYVIYLKFEEFANCLQIALSLDNLQYVKQVFTSCDDNLRKKQFCYILGRQGTTFELDE DMCADDEERYLMQDIINNAKLSEGYLALARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPADSASGGSSGNW LFKNKEHGKASAAASMGMILLWDVDTGLAQLDKYFHSNDNYVIAGALLGVGIVNCSVKNDCDPALALLADYVDKEDPFIRIGAIMGLGIAYAGAQNEQIR SKLTPILNDAKTPLDVVAFTAISLGLIYVGSCNEEVAQAIIFALMDRSESELQDPLTRFLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSC AYAGTGNVLKVQHLLGNCAQHLEKGENHQGPAVLGIAMVAMAEELGVEMAIRSLEHLLQYGEQNIRKSVPLALALLCISNPKVNVMDTLSRLSHDADAEV ASAAIIALGLIGAGTNNARIAGMLRNLSSYYYKDATLLFCVRLAQGLVHLGKGLLTLNPYHSDRSLLSPMALAGLVTFLHACLEMKAMILGRYHIVLYFL VLAMQPRMLMTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYREES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10002169 [exp]	0	1
AT2G32730			26S proteasome regulatory comp...		Lus10016681 [exp]	1.4	0.9659
AT2G32730			26S proteasome regulatory comp...		Lus10007140 [exp]	2.0	0.9650
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10024024 [exp]	2.8	0.9406
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10029695 [exp]	3.5	0.9248
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022347 [exp]	4.2	0.9415
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10000120 [exp]	4.7	0.9168
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10039885 [exp]	4.9	0.9031
AT1G53050			Protein kinase superfamily pro...		Lus10035892 [exp]	8.1	0.9036
AT5G18230			transcription regulator NOT2/N...		Lus10020262 [exp]	10.0	0.9051
AT2G34930			disease resistance family prot...		Lus10016384 [exp]	10.4	0.8867

Compare expression of checked genes

Lus10002169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.