Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42550 727 / 0 PMI1 plastid movement impaired1 (.1) AT5G20610 123 / 2e-28 unknown protein AT5G26160 113 / 3e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039886 [exp] 1419 / 0 AT1G42550 816 / 0.0 plastid movement impaired1 (.1) Lus10017162 [exp] 105 / 8e-23 AT5G20610 762 / 0.0 unknown protein Lus10021568 [exp] 104 / 1e-22 AT5G20610 827 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G255500 [exp] 953 / 0 AT1G42550 754 / 0.0 plastid movement impaired1 (.1) Potri.002G006100 [exp] 940 / 0 AT1G42550 796 / 0.0 plastid movement impaired1 (.1) Potri.006G224200 [exp] 117 / 2e-26 AT5G26160 641 / 0.0 unknown protein Potri.006G145500 [exp] 112 / 4e-25 AT5G20610 565 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002170 pacid=23158719 polypeptide=Lus10002170 locus=Lus10002170.g ID=Lus10002170.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCATCAAGATCATCCTCAGCCAGGAGGAACTCCAACACACAGCTCCTTGAAGAGCTGGAAACACTCAGCCAGTCACTCTACCAGGCTCACA CTTCCAGCAGGAGAACAAACTCATTAGCACTCCCCAGGAGTTCACTCCCTTCCTTGACCTCCACTCATGAAGACCAACAGCCAATCCCGATTGCTAAATC CGACAGCACACGATCCACTTCGCGTCCTCGGAGGATGTCTTTATCCCCCTGGCGATCCAAACCCAAGCTTGATGATTTTGACAACAATAGCAACAGTAGC AGCAGCAGTAAACCTGTTGTTCAGAAACTCGGACCGACGAATAAAGCTGAAGTGGTAGAGAAGAAAGGGATATGGAATTGGAAGCCAATTCGAGCACTTT CCCACATTGGGATGCAGAAACTGAGCTGCTTGTTCTCAGTTGAGGTTGTTGCTGTTCAGGGTTTGCCATCTTCGATGAATGGACTCAGGCTTTCGGTATG TGTCAGGAAGCAAGAGACTAAAGACGGGTCTGTACACACTATGCCTTCCAGGGTTTCGCAGGGAGGTGCTGATTTTGAAGAGACGCTTTTCCTGAAATGT CATGTTTACTGCACCACCACTGCTAATAAGCAGCTGAAATTCGAGCCGAGGGTTTTCTACATCTATGTGTTTGCTGTGGATGCTGAGGAACTTGATTTTG GTAGGAGCTCTGTGGATTTGAGTGAGTTGATTCAGGAATCCATGGAGAAGAATCTGCAAGGAACAAGGATTCGTCAGTGGGATACTACTTTTACACTGGC GGGAAAGGCTAAGGGAGCTGAAGTTGTGCTGAAGCTTGGGTTTCAGGTTATGGAGAAGGATGGTGGGATTGATATATACAGCAGTCAGGTTGCAGGTTCT TATGAAGGGCTGAAAGGTAGTAAAGTGAAGAGCTTTTTACCTTCGGTTGGTCGTAAGCAGTCGAAGATGTCGTTCAGTGTGACGAGTCCCAGGATTACTA GTAGAGCTGAGGCTTGGACACCTTCACAGACGAGATCACCGGCTGATCTTCAAGGAATTGATGACTTGAATCTCGACGAGCCACCTGCCCCGGCTGCTGT TGTTGTACCTCCTTCTTCAGAAGAGCAGAAATTGGATGACGTGGATCTTCGGGAGTTTGAGGTGGTTTATAAAGGAGTGGAGATTTCTGAGGAGAAAGAA CAAGAGAGTGATGGAGATGGAGACTATTCTGTGGAGAATTTGGAAGAAGAAAAGTCTGCTGCTTCGAGCGAGGTTGTGAAGGAGGTCGTGCATCATGATC AGGTTCACTTGAATAGGTTGTCTGAGCTCGATTCGATTGCTCAGCAGATAAAGGCTCTTGAGTCCATGATGGGGGAAGAGAAGTCTGAGAATGCAGAAGA TGAAATTGAGTCACAGAAGCTTGATGAAGATGAGGAAACAGTGACTAAGGAGTTTCTACAGATGCTTGAAGATGAAGAAGAAGGGAATGAATTCAAATTC AAATTCAAGTTCAACCAACCTGAAGTTCCACAACTGCAACTTGATGAAGGTGGTGGTAATGATTCAGCTGAAGTTGATTCCAAAGGGTATATCTCGGATC TCGGGAAGGGATTAACGTGCGTAGTTCAAACCCGGGATGGGGGATACTTGGCAGCAATGAATCCACTTGATGCTGTAGTTACGAAGAAAGAGACTCCAAA GCTGGCAATGCAGCTTTCGAAACCGCTTGTTCTTGCATCGAATCAATCATCTATTAGCGGGTTTGAGCTGTTTCAGATGATGGCAGCGGTTGGGTATGAA GAGCTGAGTTCTCAGATTTTGTCACAGATGCCACTTGACGAGCTAACAGGGAAAACTGCAGAACAGGTTGCATTTGAAGGGATAGCTTCAGCAATCATCC AAGGGAGGAACAAAGAAGGCGCTACCTCGACTGCTGCTCGAACAATCACATCAGTGAAAGCCATGGCAAATGCATTGAGCTCCGGAAGGAAAGACAGGAT CTCGACCGGAATATGGAATGTGAGCGAAGAGCCTCTCACTGCAGAGGAGGTCATAGCCTTCTCGTTGCAGAAGATCGAGGCGATGGCCATTGAAGCCTTG AGAATCCAGGCAGACATGGCTGAGGAAGATGCTCCCTTTGATGTTTCTCCACTTCCTGGAAAGACTGCAACTCAAAACCAACCTCTGACATCTGCAGTTC CTCTGGAAGAGTGGATGAGAAAAAGTGATGACAAATCAGTAGAGACGGATGCATTTACAGTAGTTGTGTGTGTACAGCTCCGTGATCCCTTGAGGCGATA TGAAGCAGTTGGAGGGCCTGTTATGGCTCTTATCCATGGAAGCAAAGCCGAAATCGATGACAAATACGAAGAAGAAGAGAAGAAGTTCAAGGTCAAGAGC TTACATCTTGGAGGCCTCAAGATAAGCACCAAGGGGAAGAGGAATGCATTTGATACAGAACGGCAAAGGTTGATTGCAATGCAATGGTTGGTATCTTATG GAATAGTGAAGGGAGGGAAGAAAGGGAAGCTTACGTCAGGGAAAGAGCAGGACGTGCTGTGGAGCATTTCGTCGAGAATCATGGCGGATATGTGGCTGAA ATCAATGAGGAATCCAGATGTTAAGCTGGTGGTTAAGTAA
AA sequence Show only first row Show all	>Lus10002170 pacid=23158719 polypeptide=Lus10002170 locus=Lus10002170.g ID=Lus10002170.BGIv1.0 annot-version=v1.0 MAASSRSSSARRNSNTQLLEELETLSQSLYQAHTSSRRTNSLALPRSSLPSLTSTHEDQQPIPIAKSDSTRSTSRPRRMSLSPWRSKPKLDDFDNNSNSS SSSKPVVQKLGPTNKAEVVEKKGIWNWKPIRALSHIGMQKLSCLFSVEVVAVQGLPSSMNGLRLSVCVRKQETKDGSVHTMPSRVSQGGADFEETLFLKC HVYCTTTANKQLKFEPRVFYIYVFAVDAEELDFGRSSVDLSELIQESMEKNLQGTRIRQWDTTFTLAGKAKGAEVVLKLGFQVMEKDGGIDIYSSQVAGS YEGLKGSKVKSFLPSVGRKQSKMSFSVTSPRITSRAEAWTPSQTRSPADLQGIDDLNLDEPPAPAAVVVPPSSEEQKLDDVDLREFEVVYKGVEISEEKE QESDGDGDYSVENLEEEKSAASSEVVKEVVHHDQVHLNRLSELDSIAQQIKALESMMGEEKSENAEDEIESQKLDEDEETVTKEFLQMLEDEEEGNEFKF KFKFNQPEVPQLQLDEGGGNDSAEVDSKGYISDLGKGLTCVVQTRDGGYLAAMNPLDAVVTKKETPKLAMQLSKPLVLASNQSSISGFELFQMMAAVGYE ELSSQILSQMPLDELTGKTAEQVAFEGIASAIIQGRNKEGATSTAARTITSVKAMANALSSGRKDRISTGIWNVSEEPLTAEEVIAFSLQKIEAMAIEAL RIQADMAEEDAPFDVSPLPGKTATQNQPLTSAVPLEEWMRKSDDKSVETDAFTVVVCVQLRDPLRRYEAVGGPVMALIHGSKAEIDDKYEEEEKKFKVKS LHLGGLKISTKGKRNAFDTERQRLIAMQWLVSYGIVKGGKKGKLTSGKEQDVLWSISSRIMADMWLKSMRNPDVKLVVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G42550		PMI1	plastid movement impaired1 (.1...		Lus10002170 [exp]	0	1
AT1G42550		PMI1	plastid movement impaired1 (.1...		Lus10039886 [exp]	1.0	0.9690
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10005411 [exp]	1.4	0.9500
AT4G02920			unknown protein		Lus10042685 [exp]	6.3	0.9082
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10018229 [exp]	7.1	0.8826
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10039216 [exp]	7.7	0.9120
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10015278 [exp]	9.8	0.8807
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10010412 [exp]	11.0	0.9178
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005765 [exp]	13.0	0.8691
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10041036 [exp]	15.1	0.8724
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001420 [exp]	20.5	0.8928

Compare expression of checked genes

Lus10002170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.