Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33845 171 / 2e-55 Nucleic acid-binding, OB-fold-like protein (.1) AT4G28440 167 / 6e-54 Nucleic acid-binding, OB-fold-like protein (.1) AT1G23750 161 / 6e-52 Nucleic acid-binding, OB-fold-like protein (.1) AT1G03810 160 / 1e-51 Nucleic acid-binding, OB-fold-like protein (.1) AT1G10590 147 / 3e-46 Nucleic acid-binding, OB-fold-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039889 [exp] 250 / 6e-87 AT2G33845 185 / 1e-60 Nucleic acid-binding, OB-fold-like protein (.1) Lus10030617 [exp] 158 / 1e-50 AT1G23750 229 / 7e-79 Nucleic acid-binding, OB-fold-like protein (.1) Lus10015411 [exp] 159 / 2e-50 AT2G33845 186 / 4e-61 Nucleic acid-binding, OB-fold-like protein (.1) Lus10030871 [exp] 157 / 4e-50 AT1G23750 226 / 2e-77 Nucleic acid-binding, OB-fold-like protein (.1) Lus10013989 [exp] 155 / 3e-49 AT4G28440 186 / 3e-61 Nucleic acid-binding, OB-fold-like protein (.1) Lus10029155 [exp] 145 / 2e-45 AT1G23750 206 / 1e-69 Nucleic acid-binding, OB-fold-like protein (.1) Lus10013010 [exp] 144 / 3e-45 AT1G23750 206 / 1e-69 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014400 [exp] 207 / 4e-70 AT4G28440 194 / 9e-65 Nucleic acid-binding, OB-fold-like protein (.1) Potri.007G137600 [exp] 204 / 5e-69 AT4G28440 193 / 2e-64 Nucleic acid-binding, OB-fold-like protein (.1) Potri.011G114800 [exp] 173 / 2e-56 AT2G33845 214 / 3e-72 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G396100 [exp] 172 / 3e-56 AT1G23750 194 / 5e-65 Nucleic acid-binding, OB-fold-like protein (.1) Potri.010G041000 [exp] 166 / 8e-54 AT1G23750 234 / 1e-80 Nucleic acid-binding, OB-fold-like protein (.1) Potri.008G189900 [exp] 164 / 4e-53 AT1G23750 239 / 9e-83 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002172 pacid=23158750 polypeptide=Lus10002172 locus=Lus10002172.g ID=Lus10002172.BGIv1.0 annot-version=v1.0 ATGGCGACAGTCCCTGAAAAGAAGAAGCCAGTGTTTGTAAAGGTAGGGACCTTGACCCCAGGCACCAGTGGCCACAACCTGACTGTCAAAGTCGTCGAGT CTAAAGACGTCCCAGCTCCCAAGCCCCGCCGTGGACCTCTGTCTCTTTCCCAGCGCCCTGTCCGCCCTACGCGCATCGCTGAGTGCCTGGTCGGCGATGA CACCGCCTCCATCGTCTTCACCGCTCGTAACGAGCAAGTTGACCTCATGACACCCGGTGCCACCATTATCCTGCGCAATGCTAAGATTGACATGTTCAAG GGGACAATGAGGCTTGCAGTGGACAAGTGGGGACGTGTGGAGGTTACTGAACCAGCTGAATTCGAGGTTAAAGACGGTAACAATCTTTCTCTGATCGAGT ATGAGCTGGTCAATGTTTGA
AA sequence Show only first row Show all	>Lus10002172 pacid=23158750 polypeptide=Lus10002172 locus=Lus10002172.g ID=Lus10002172.BGIv1.0 annot-version=v1.0 MATVPEKKKPVFVKVGTLTPGTSGHNLTVKVVESKDVPAPKPRRGPLSLSQRPVRPTRIAECLVGDDTASIVFTARNEQVDLMTPGATIILRNAKIDMFK GTMRLAVDKWGRVEVTEPAEFEVKDGNNLSLIEYELVNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10002172 [exp]	0	1
AT3G03590			SWIB/MDM2 domain superfamily p...		Lus10005667 [exp]	1.0	0.9154
AT3G03920			H/ACA ribonucleoprotein comple...		Lus10020289 [exp]	1.4	0.9099
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10039889 [exp]	4.0	0.8876
AT5G03740	C2H2ZnF	HD2C, HDT3	HISTONE DEACETYLASE 3, histone...		Lus10020541 [exp]	4.2	0.9011
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004302 [exp]	6.3	0.8802
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028225 [exp]	6.7	0.8989
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10009390 [exp]	6.9	0.8988
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	9.8	0.8997
AT3G18880			Nucleic acid-binding, OB-fold-...		Lus10017467 [exp]	12.6	0.8637
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009580 [exp]	13.7	0.8798

Compare expression of checked genes

Lus10002172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.