Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28000 50 / 5e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G28010 49 / 9e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G35260 42 / 2e-05 MLP165 MLP-like protein 165 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039891 [exp] 283 / 7e-100 AT5G28010 59 / 3e-11 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10002175 [exp] 235 / 1e-80 AT5G28010 50 / 4e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10039863 [exp] 152 / 7e-48 AT5G28010 42 / 3e-05 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10039864 [exp] 136 / 2e-40 AT5G54160 65 / 7e-12 O-methyltransferase 1 (.1) Lus10039892 [exp] 119 / 9e-36 ND 41 / 9e-06 Lus10018627 [exp] 96 / 2e-26 ND / Lus10002176 [exp] 83 / 1e-20 AT1G24020 65 / 7e-14 MLP-like protein 423 (.1.2) Lus10039893 [exp] 53 / 4e-10 AT1G70870 53 / 1e-10 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10030840 [exp] 45 / 2e-06 AT1G24020 189 / 2e-62 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G051100 [exp] 40 / 0.0002 AT1G70840 115 / 3e-33 MLP-like protein 31 (.1) Potri.004G020000 [exp] 39 / 0.0005 AT1G70880 69 / 3e-15 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10002174 pacid=23158725 polypeptide=Lus10002174 locus=Lus10002174.g ID=Lus10002174.BGIv1.0 annot-version=v1.0 ATGGCGGCTCAGACTCACAAGCTAGAGGTTAAGGTAACAATGAAATCACCAGAGAAGCTGGTGTCTTTCTACATAAACCATGTCCTCGAAACGCCAAAAC TGGCTCCTGCGATCATCAAGGCATGCGAGACCATCGGAGGAGGCACCCAGATGGGTCCCGGCTCCGTTTTCCACGTCACTTACATCCTCCCTGGGATGAC TGAGGTGGTGAGTGCCAAGGGAATGTTGGGAGATGTAGACGAAGTAGGAGGGAAGTACTTGTCATTCACGGTGATCGAAGGGGAGATGTTACAGAAGTAT CCTACTTTCATCTCAAGAGCTACCATTGTCGGCAACGAGATTACCTGGACTCTCATGTACGAGAAGGCAGATCCGAGCACCCTTCCTCCTCTCGAATATG TTACACTTTATACGCTCCTTACCCAAGCCTTCGACAACTTCAATTGCTGA
AA sequence Show only first row Show all	>Lus10002174 pacid=23158725 polypeptide=Lus10002174 locus=Lus10002174.g ID=Lus10002174.BGIv1.0 annot-version=v1.0 MAAQTHKLEVKVTMKSPEKLVSFYINHVLETPKLAPAIIKACETIGGGTQMGPGSVFHVTYILPGMTEVVSAKGMLGDVDEVGGKYLSFTVIEGEMLQKY PTFISRATIVGNEITWTLMYEKADPSTLPPLEYVTLYTLLTQAFDNFNC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10002174 [exp]	0	1
AT1G54730			Major facilitator superfamily ...		Lus10033815 [exp]	2.0	0.9446
AT3G09870			SAUR-like auxin-responsive pro...		Lus10004014 [exp]	2.6	0.9545
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10014411 [exp]	5.3	0.9419
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10016685 [exp]	6.5	0.9432
AT1G17200			Uncharacterised protein family...		Lus10026196 [exp]	7.1	0.9266
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10033087 [exp]	8.4	0.9285
AT1G09310			Protein of unknown function, D...		Lus10031428 [exp]	9.2	0.9355
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10028770 [exp]	10.3	0.8776
AT1G17200			Uncharacterised protein family...		Lus10042471 [exp]	11.8	0.9414
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10000592 [exp]	13.7	0.9245

Compare expression of checked genes

Lus10002174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.