Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28010 50 / 5e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70840 44 / 5e-06 MLP31 MLP-like protein 31 (.1) AT1G70870 44 / 6e-06 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70850 39 / 0.0007 MLP34 MLP-like protein 34 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039891 [exp] 243 / 8e-84 AT5G28010 59 / 3e-11 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10002174 [exp] 235 / 9e-81 AT5G28010 50 / 4e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10039863 [exp] 163 / 2e-52 AT5G28010 42 / 3e-05 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10039864 [exp] 144 / 2e-43 AT5G54160 65 / 7e-12 O-methyltransferase 1 (.1) Lus10039892 [exp] 137 / 6e-43 ND 41 / 9e-06 Lus10018627 [exp] 104 / 5e-30 ND / Lus10002176 [exp] 91 / 1e-23 AT1G24020 65 / 7e-14 MLP-like protein 423 (.1.2) Lus10039893 [exp] 52 / 1e-09 AT1G70870 53 / 1e-10 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10028887 [exp] 52 / 6e-09 AT2G01520 129 / 1e-38 \(Zusammen-CA\)-enhanced 1, MLP-like protein 328 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G051100 [exp] 42 / 2e-05 AT1G70840 115 / 3e-33 MLP-like protein 31 (.1) Potri.008G131200 [exp] 42 / 2e-05 AT1G14930 122 / 4e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.004G020000 [exp] 38 / 0.0007 AT1G70880 69 / 3e-15 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10002175 pacid=23158742 polypeptide=Lus10002175 locus=Lus10002175.g ID=Lus10002175.BGIv1.0 annot-version=v1.0 ATGGCGGCTCAGATTCACAAGTTAGAGGTCAAGGTTGCGATGAAATCGCCAGAGAAGCTGGTGTCTTTCTTCAGGAACCATCTCCTCGATATGCCAAAAC TTGCTCCTGCTATCGTCAAGTCATGCGAGATCATCGGCGGAGGCACCCAGATGGGTCCAGGCTCTCGTCTCAGTGTCACTTACACCATCCCTGGGATGGC TCAGCTGTTGAGTGCCAAAGCAACGATGGAAGATGTAGATGAAGTGGGAGGGAAGTACATGACAGTGGCGGTGACCGAAGGGGACATATTGCAGAAGTAT CCTACTTACGTCTCCAAAGCTGTGATCATCGGCAACGAGGTTACCTGGACTGTCGAGTACGAGAAGGCCGATTCGACCACTCTTCCTCCTCTCGAATATG TTCCACTTTACACACTCCTCACCCAAGCCTTTGACAACTTCAACTACTGA
AA sequence Show only first row Show all	>Lus10002175 pacid=23158742 polypeptide=Lus10002175 locus=Lus10002175.g ID=Lus10002175.BGIv1.0 annot-version=v1.0 MAAQIHKLEVKVAMKSPEKLVSFFRNHLLDMPKLAPAIVKSCEIIGGGTQMGPGSRLSVTYTIPGMAQLLSAKATMEDVDEVGGKYMTVAVTEGDILQKY PTYVSKAVIIGNEVTWTVEYEKADSTTLPPLEYVPLYTLLTQAFDNFNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10002175 [exp]	0	1
AT1G66920			Protein kinase superfamily pro...		Lus10025547 [exp]	2.6	0.9091
					Lus10010378 [exp]	3.0	0.9490
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10008004 [exp]	4.2	0.9101
AT1G07400			HSP20-like chaperones superfam...		Lus10021503 [exp]	6.0	0.9175
AT5G55480		GPDL1, GDPDL4, ...	glycerophosphodiesterase-like ...		Lus10018042 [exp]	7.4	0.9119
					Lus10032860 [exp]	8.7	0.9255
AT1G78410			VQ motif-containing protein (....		Lus10038502 [exp]	9.8	0.8954
					Lus10021726 [exp]	10.6	0.8776
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039702 [exp]	13.0	0.9123
AT5G10530			Concanavalin A-like lectin pro...		Lus10007073 [exp]	13.3	0.8826

Compare expression of checked genes

Lus10002175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.