Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24020 65 / 1e-13 MLP423 MLP-like protein 423 (.1.2) AT1G70830 61 / 3e-12 MLP28 MLP-like protein 28 (.1.2.3.4.5) AT1G70840 59 / 3e-11 MLP31 MLP-like protein 31 (.1) AT1G70870 57 / 5e-11 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70850 57 / 2e-10 MLP34 MLP-like protein 34 (.1.2.3) AT5G28010 56 / 4e-10 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G35260 51 / 1e-08 MLP165 MLP-like protein 165 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039893 [exp] 128 / 2e-39 AT1G70870 53 / 1e-10 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10002175 [exp] 100 / 2e-27 AT5G28010 50 / 4e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10039863 [exp] 98 / 1e-26 AT5G28010 42 / 3e-05 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10002174 [exp] 92 / 4e-24 AT5G28010 50 / 4e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10039891 [exp] 91 / 1e-23 AT5G28010 59 / 3e-11 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10039864 [exp] 82 / 2e-19 AT5G54160 65 / 7e-12 O-methyltransferase 1 (.1) Lus10030646 [exp] 74 / 6e-17 AT1G24020 189 / 3e-62 MLP-like protein 423 (.1.2) Lus10030840 [exp] 72 / 1e-16 AT1G24020 189 / 2e-62 MLP-like protein 423 (.1.2) Lus10018627 [exp] 65 / 3e-14 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096000 [exp] 69 / 2e-15 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2) Potri.008G131300 [exp] 62 / 9e-13 AT1G14930 100 / 1e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.004G020100 [exp] 49 / 9e-08 AT1G70880 58 / 5e-11 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.017G051100 [exp] 48 / 2e-07 AT1G70840 115 / 3e-33 MLP-like protein 31 (.1) Potri.004G020000 [exp] 48 / 2e-07 AT1G70880 69 / 3e-15 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G111000 [exp] 44 / 5e-06 AT1G70830 175 / 8e-57 MLP-like protein 28 (.1.2.3.4.5) Potri.017G051200 [exp] 40 / 0.0001 AT1G70840 116 / 3e-34 MLP-like protein 31 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10002176 pacid=23158741 polypeptide=Lus10002176 locus=Lus10002176.g ID=Lus10002176.BGIv1.0 annot-version=v1.0 ATGGCTCAGCTTGTGAAGATTGAGGCCAGAGTTTCGATTAAGAATCCGGACAAGCTCATGAATTTCCTCAAGAACAACCTCCACACCTTGCCTCAGCTGT TCCCTGATGCCTACAAGAGCGTTGAGATCCGAGGAGGAGGTGGCCGCAGCGGTAGCCAGCTGACAACCGGATCCATCATCATGCTCACCTACTCTCTCCC TGGGGACTCGGCGCCATTACCGAACAGCTTGATGAGAGGGGAAGTGAAGGTGGAAGCAATGGACGAAGCAATGAAGTCGATAACGTTGAATGTGGTAGGC GGCGATGGGCTCAAGACTTACACAAGTTTCAGGTCGAAATGCCAAATTGTTGGGAACATTGTGAATTGGAGCATCGAGTACGAGAAGGCTACTCCTTCTT CACCGTCTGCTGACCCTTATTTGGAGTTTTACGTCAAACTCTCCAAGACCATCGACATATAA
AA sequence Show only first row Show all	>Lus10002176 pacid=23158741 polypeptide=Lus10002176 locus=Lus10002176.g ID=Lus10002176.BGIv1.0 annot-version=v1.0 MAQLVKIEARVSIKNPDKLMNFLKNNLHTLPQLFPDAYKSVEIRGGGGRSGSQLTTGSIIMLTYSLPGDSAPLPNSLMRGEVKVEAMDEAMKSITLNVVG GDGLKTYTSFRSKCQIVGNIVNWSIEYEKATPSSPSADPYLEFYVKLSKTIDI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10002176 [exp]	0	1
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10005995 [exp]	4.0	0.8652
AT1G45160			Protein kinase superfamily pro...		Lus10005470 [exp]	8.7	0.8929
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10014002 [exp]	10.2	0.7517
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10006357 [exp]	11.7	0.8909
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10040055 [exp]	12.2	0.7041
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10019668 [exp]	12.4	0.8018
AT4G37440			unknown protein		Lus10019305 [exp]	13.2	0.7857
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10012647 [exp]	15.4	0.8798
AT1G05820		ATSPPL5	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10001154 [exp]	17.3	0.7576
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10027345 [exp]	17.7	0.8778

Compare expression of checked genes

Lus10002176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.