Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06290 747 / 0 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) AT1G06310 730 / 0 ACX6 acyl-CoA oxidase 6 (.1) AT5G65110 272 / 1e-83 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT3G06690 208 / 6e-65 acyl-CoA oxidases;oxidoreductases, acting on the CH-CH group of donors;FAD binding;oxidoreductases;acyl-CoA oxidases (.1) AT4G16760 195 / 5e-55 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) AT2G35690 188 / 2e-52 ACX5 acyl-CoA oxidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039894 [exp] 970 / 0 AT1G06290 1036 / 0.0 acyl-CoA oxidase 3 (.1) Lus10016249 [exp] 840 / 0 AT1G06290 965 / 0.0 acyl-CoA oxidase 3 (.1) Lus10041711 [exp] 273 / 8e-84 AT5G65110 1199 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10024038 [exp] 234 / 2e-69 AT5G65110 1122 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10007815 [exp] 192 / 4e-54 AT4G16760 1019 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004745 [exp] 192 / 1e-53 AT4G16760 1112 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10040183 [exp] 192 / 2e-53 AT4G16760 1051 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004386 [exp] 189 / 1e-52 AT4G16760 1107 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10027811 [exp] 45 / 0.0002 AT3G51840 741 / 0.0 acyl-CoA oxidase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G092600 [exp] 804 / 0 AT1G06290 1070 / 0.0 acyl-CoA oxidase 3 (.1) Potri.013G123500 [exp] 798 / 0 AT1G06290 1061 / 0.0 acyl-CoA oxidase 3 (.1) Potri.005G077600 [exp] 286 / 9e-89 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.007G090400 [exp] 278 / 7e-86 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.003G079200 [exp] 184 / 5e-51 AT4G16760 1143 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.001G155500 [exp] 183 / 9e-51 AT4G16760 1152 / 0.0 acyl-CoA oxidase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0087 [flax] [poplar] Acyl-CoA_dh PF01756 [flax] [poplar] ACOX Acyl-CoA oxidase CL0087 [flax] [poplar] Acyl-CoA_dh PF00441 [flax] [poplar] Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002177 pacid=23158732 polypeptide=Lus10002177 locus=Lus10002177.g ID=Lus10002177.BGIv1.0 annot-version=v1.0 ATGAACGCGAAGGCTGTCGATCTTCTTTTCCTCTTACACTGTCTGAAGGTTCGAGGAATTGAAACAGTTGCAACCTACGATTCCAACACAAATGAGTTTG TCATCACTACTCCTTGTGAATCCGCTCAGAAGTACTGGATTGGTGGGGCTGCTAATCATGCAACGCACACAATAGTGTTTTCACAGCTCAATATAAATGG AAGAAACCAAGGAGTCCATGCATTTATAGTGCAGATCAGAGATGCAGAAGGAAACATATGCCCGAACATCCGCATTGCAGATTGTGGTCATAAAATTGGT CTGAATGGTGTTGACAACGGTCGAATCTGGTTTGACAATGTTCGAATTCCTAGAGAAAATCTGTTGAATTCTGTAGCCGATGTCACCCCCGATGGACAGT ATAAGAGTGCAATAGAAGACCCTGATCAGAGATTTGCAGCTTTCCTGGCCCCTCTCACGTCTGGTCGTGTAACTATTTCCCTCTCTGCAATTTACTCGGC ACAGATTGGCTTAGCAATTGCCACCAGATTTGCACTTAGTCGGCGGGCTTTCTCGTTTACACCTAATGCACCAGAAGAAGTCCTGTTGCTTGACTACCCA AGTCATCAGAGGCGACTCTTGCCTCTTATTGCCAAGACATATGCCATGACCTGTGCTGGGAATTACTTGAAGAAGATATACGTGAAGAGGACACCTGCAT CAAATAAAATCATTCACGTTGTTTCAAGTGGATTCAAGGCTGTCTTGACCTGGCATAATATGAGAACACTACAAGAATGCCGTGAAGCCTGTGGCGGACA AGGGCTGAAGAGTGATAATCAAGTTGGTCATCTGAAGGGCGAATATGATGTCCAGTCCACTTTTGAGGGCGATAATAATGTTCTTATGCAGCAGGTAAGC AAAGCGCTTCTTGCGGAGTATGTAGCTGCTACAAAAAGGAACAAGCCTTTCAAGGGTCTCGGCTTGGAGCATATGAACGAACCTTGGCCGGTCATTCCAT CCCAACTCACCAGAAATACCCTCAGAAGCAGTCAATTCCAGATTACTGCCCTCCGCTTGAGAGAGCGAGACCTCTTGAATCGTTTCGCTAAAGAGATGTC ACAACACCAGTCAAATGGAGTTGATAAAGACTACGCCTTTGCACTGGGTTATCAACTCGCGGAAGACTTGGGGAGGGCTTTCTCCGACAGAATTATTTTT GAAACCTTCCTCGAGGTCGAGGATACAGTGTCCATTGGTCCATTGAAGGATGTGCTGGGTCAACTGAGATCATTGTACGCATTGACGTGCATGGAAGAAG ATGCAGCATTTCTCCGGTACGGCTACTTATCAACTGATAACGCAGCTTCCGTTAGAACAGAAGTGGCGAAGCTTTGCAGCGAGCTGAGACCGCATGCGCT TGGCTTGGTCAGCTCCTTCGGCATTCCCAGTGCTTATCTCAGCCCCATTGCTTTCAACTGGATCAATGCGAATTCTTGGTCTTCTTCCTCGTAG
AA sequence Show only first row Show all	>Lus10002177 pacid=23158732 polypeptide=Lus10002177 locus=Lus10002177.g ID=Lus10002177.BGIv1.0 annot-version=v1.0 MNAKAVDLLFLLHCLKVRGIETVATYDSNTNEFVITTPCESAQKYWIGGAANHATHTIVFSQLNINGRNQGVHAFIVQIRDAEGNICPNIRIADCGHKIG LNGVDNGRIWFDNVRIPRENLLNSVADVTPDGQYKSAIEDPDQRFAAFLAPLTSGRVTISLSAIYSAQIGLAIATRFALSRRAFSFTPNAPEEVLLLDYP SHQRRLLPLIAKTYAMTCAGNYLKKIYVKRTPASNKIIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKSDNQVGHLKGEYDVQSTFEGDNNVLMQQVS KALLAEYVAATKRNKPFKGLGLEHMNEPWPVIPSQLTRNTLRSSQFQITALRLRERDLLNRFAKEMSQHQSNGVDKDYAFALGYQLAEDLGRAFSDRIIF ETFLEVEDTVSIGPLKDVLGQLRSLYALTCMEEDAAFLRYGYLSTDNAASVRTEVAKLCSELRPHALGLVSSFGIPSAYLSPIAFNWINANSWSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10002177 [exp]	0	1
AT1G71980			Protease-associated (PA) RING/...		Lus10009438 [exp]	1.4	0.9279
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10038988 [exp]	2.4	0.9127
AT1G71980			Protease-associated (PA) RING/...		Lus10000053 [exp]	2.4	0.9094
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10027276 [exp]	2.8	0.8780
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006572 [exp]	4.5	0.8484
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002808 [exp]	5.3	0.8696
AT1G15060			Uncharacterised conserved prot...		Lus10013496 [exp]	7.4	0.8767
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006573 [exp]	7.5	0.8294
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	8.5	0.8713
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002809 [exp]	9.2	0.8365

Compare expression of checked genes

Lus10002177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.