Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60860 423 / 4e-153 AtRABA1f RAB GTPase homolog A1F (.1) AT3G15060 407 / 9e-147 AtRABA1g RAB GTPase homolog A1G (.1) AT1G28550 397 / 8e-143 AtRABA1i RAB GTPase homolog A1I (.1) AT2G33870 391 / 2e-140 ArRABA1h RAB GTPase homolog A1H (.1) AT4G18430 387 / 1e-138 AtRABA1e RAB GTPase homolog A1E (.1) AT4G18800 365 / 2e-130 AthSGBP, AtRab11B, AtRABA1d RAB GTPase homolog A1D (.1) AT5G45750 360 / 4e-128 AtRABA1c RAB GTPase homolog A1C (.1) AT1G16920 345 / 2e-122 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT1G06400 343 / 1e-121 ARA2, AtRABA1a, AtRab11E, Ara-2 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) AT1G09630 312 / 4e-109 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017679 [exp] 438 / 4e-159 AT5G60860 426 / 4e-154 RAB GTPase homolog A1F (.1) Lus10015297 [exp] 422 / 7e-153 AT5G60860 428 / 6e-155 RAB GTPase homolog A1F (.1) Lus10025432 [exp] 416 / 2e-150 AT5G60860 422 / 1e-152 RAB GTPase homolog A1F (.1) Lus10039895 [exp] 412 / 1e-148 AT5G60860 397 / 5e-143 RAB GTPase homolog A1F (.1) Lus10013961 [exp] 407 / 7e-147 AT5G60860 412 / 7e-149 RAB GTPase homolog A1F (.1) Lus10029253 [exp] 362 / 1e-128 AT5G45750 393 / 4e-141 RAB GTPase homolog A1C (.1) Lus10007306 [exp] 358 / 2e-127 AT5G45750 387 / 5e-139 RAB GTPase homolog A1C (.1) Lus10029789 [exp] 333 / 1e-117 AT1G06400 373 / 3e-133 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) Lus10020746 [exp] 333 / 1e-117 AT1G06400 375 / 3e-134 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G123600 [exp] 429 / 2e-155 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.019G092500 [exp] 429 / 2e-155 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.001G374000 [exp] 414 / 9e-150 AT5G60860 417 / 1e-150 RAB GTPase homolog A1F (.1) Potri.011G061300 [exp] 413 / 4e-149 AT5G60860 416 / 5e-150 RAB GTPase homolog A1F (.1) Potri.011G070300 [exp] 361 / 1e-128 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.004G061000 [exp] 359 / 7e-128 AT4G18800 392 / 9e-141 RAB GTPase homolog A1D (.1) Potri.003G004100 [exp] 312 / 4e-109 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.006G000300 [exp] 306 / 7e-107 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.008G061300 [exp] 302 / 3e-105 AT1G07410 367 / 9e-131 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.010G197200 [exp] 299 / 4e-104 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10002178 pacid=23158740 polypeptide=Lus10002178 locus=Lus10002178.g ID=Lus10002178.BGIv1.0 annot-version=v1.0 ATGGGAGCTTACAGGGCCGACGACGACTACGATTACTTGTTCAAGGTCGTCTTGATAGGCGACTCCGGCGTCGGGAAATCCAATCTCCTGTCCAGATTCA CCAGGAACGAGTTCAGTCTCGAGTCCAAATCCACAATCGGCGTTGAATTCGCCACCCGCAGCATCCAGGTCGATGACAAGGTCGTCAAAGCCCAGATTTG GGACACTGCTGGACAAGAAAGATATCGTGCTATCACCAGCGCATACTACAGAGGTGCAGTCGGTGCTTTGCTCGTCTACGATGTCACTCGACACGTCACA TTTGAAAATGTGGAGAGGTGGTTAAAAGAGCTCCGTGACCACACCGATGCAAACATCGTGATCATGCTTGTTGGAAACAAGGCCGATCTTCGACACCTCC GTGCTGTTCAGACCGAGGACTCCAAAGCATTTGCAGAGAGGGAGAACACCTTCTTCATGGAAACATCCGCCCTCGAATCCTTGAATGTCGAGAATGCCTT TACTGAGGTGCTCACCCAGATATACCGGGTCGTCAGCCGCAAGGCCCTTGATGTCGGAGATGACCCAGCTGCCTTGCCGAAAGGACAGACTATTAACGTT GGCAAGGATGATGTATCAGCTGTTAAGAAAGTCGGGTGCTGCTCCGCATAG
AA sequence Show only first row Show all	>Lus10002178 pacid=23158740 polypeptide=Lus10002178 locus=Lus10002178.g ID=Lus10002178.BGIv1.0 annot-version=v1.0 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT FENVERWLKELRDHTDANIVIMLVGNKADLRHLRAVQTEDSKAFAERENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINV GKDDVSAVKKVGCCSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10002178 [exp]	0	1
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10017371 [exp]	1.0	0.8687
AT5G25510			Protein phosphatase 2A regulat...		Lus10033069 [exp]	2.4	0.8525
AT1G53290			Galactosyltransferase family p...		Lus10013683 [exp]	2.6	0.8235
AT2G15730			P-loop containing nucleoside t...		Lus10012072 [exp]	5.0	0.8362
AT2G41820			Leucine-rich repeat protein ki...		Lus10007543 [exp]	5.5	0.8270
AT5G27490			Integral membrane Yip1 family ...		Lus10004473 [exp]	5.5	0.8172
AT1G35780			unknown protein		Lus10033456 [exp]	5.7	0.8226
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10011583 [exp]	5.8	0.8102
AT1G50710			unknown protein		Lus10043109 [exp]	8.1	0.8462
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Lus10015185 [exp]	9.8	0.8114

Compare expression of checked genes

Lus10002178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.