Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31060 991 / 0 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G13650 400 / 4e-130 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT5G08650 126 / 5e-30 Small GTP-binding protein (.1) AT5G39900 116 / 7e-27 Small GTP-binding protein (.1) AT3G22980 100 / 1e-21 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT4G20360 91 / 5e-19 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT1G45332 91 / 1e-18 Translation elongation factor EFG/EF2 protein (.1) AT2G45030 91 / 1e-18 Translation elongation factor EFG/EF2 protein (.1) AT4G02930 88 / 4e-18 GTP binding Elongation factor Tu family protein (.1) AT1G56070 87 / 2e-17 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039896 [exp] 1091 / 0 AT2G31060 976 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10007535 [exp] 400 / 3e-130 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10012200 [exp] 354 / 3e-110 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10035968 [exp] 130 / 2e-31 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10015364 [exp] 118 / 3e-27 AT5G39900 1082 / 0.0 Small GTP-binding protein (.1) Lus10007250 [exp] 114 / 3e-26 AT5G39900 1080 / 0.0 Small GTP-binding protein (.1) Lus10025694 [exp] 103 / 9e-23 AT5G08650 1009 / 0.0 Small GTP-binding protein (.1) Lus10027995 [exp] 93 / 2e-19 AT4G02930 763 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10008161 [exp] 92 / 3e-19 AT4G02930 759 / 0.0 GTP binding Elongation factor Tu family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G123700 [exp] 1032 / 0 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.006G053000 [exp] 392 / 3e-127 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.001G305300 [exp] 126 / 4e-30 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.017G079800 [exp] 99 / 4e-21 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.014G138100 [exp] 96 / 8e-21 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.009G152500 [exp] 95 / 6e-20 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.002G215900 [exp] 93 / 1e-19 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.003G109900 [exp] 91 / 9e-19 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.001G123600 [exp] 91 / 1e-18 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.001G110200 [exp] 88 / 4e-18 AT4G20360 716 / 0.0 RAB GTPase homolog E1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain CL0437 [flax] [poplar] EF-G_C PF00679 [flax] [poplar] EFG_C Elongation factor G C-terminus CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2
Representative CDS sequence Show only first row Show all	>Lus10002179 pacid=23158748 polypeptide=Lus10002179 locus=Lus10002179.g ID=Lus10002179.BGIv1.0 annot-version=v1.0 ATGGCGGGTCCTCTGCTTCGTTCCATCTGGTCATCCGCCAAAAACTCCATTTCGTCATCATCCTCCTCCTCTTCCCCCCGATCCTTCATCAAACCCTACA TCTCCTCCCGATTAGCTCCTCTGCTTTCCCGCCATCCCGGTTCCTCCGCCAGAGCTTTCTCCGCTGCCCCTTCCGCCGCCGCACAATCATCATCACCCAC GGCTCCCAATTCGGGATTGGATCCCAGCAGACTTAGGAACGTGGCAGTAATTGCTCATGTCGATCACGGGAAGACCACACTCATGGACCGTCTGCTCAGG CAATGCGGAGCTGATATCCCTCACGAGCGTGCCATGGATTCAATCAGTCTCGAGCGAGAGCGGGGCATTACTATTGCATCCAAGGTTACGGCTATTACAT GGAAGGAGAATGAGCTGAACATGGTTGATACACCTGGACATGCAGACTTCGGCGGTGAAGTTGAACTGGTTGTTGGAATGGTTGAAGGAGCAATTTTAGT TGTAGATGCTGGTGAGGGTCCACTTGCACAGACAAAGTTTGTTCTCGCAAAAGCATTAAAGTATGGGTTGAGACCTCTCTTACTTCTGAACAAGGTAGAT AGACCTTCAGAGGAGCAACTGGACTTCCCTGTTCTCTATGCTTCTGCAAAAGAAGGATGGGCATCCTCCACCTTCACCAAGGATCCTCCTGCCGAATCAA GAAATATGTCAGATCTGCTTGACGCAATCATTAGACATGTTCCTTCACCAAACGCGAGGATTGACGAACCTTTCCAAATGCTGGTTTCAATGATGGAAAA AGACTTCTATCTTGGTCGCATTTTAACCGGACGAATATCTTCTGGGACTATTCATGTTGGAGACAGAGTGCATGGGCTTCGTTCTACAGATGCTGGGGTG GAAAAGATTGAAGAAGGGAAGGTTGTCAAGCTGATGAAGAAGAAAGGTACAAGCATGGTTCTCATTGACAGTGCTGGAGCTGGTGATATCATATCGATGG CTGGGATGGGTAAACCATCAATAGGCCACACAGTAGCAAATGTGGAGGTGACAACTCCGTTACCAGGGGTTGAACTGGATCCTCCGACCATTTCCATGAC TTTCAGTGTCAATGATTCTCCGTTGGCTGGCCGGGATGGTACACATTTAACTGCTGGAAAAATTGGTGATCGTTTGATGGCTGAAGCCGAAACAAATCTT GCTATTAATGTGCTTCCTGGGATAGGAGAGTCATATGAAGTGCAAGGAAGAGGAGAACTTCAACTGGGCATTTTGATTGAGAATATGAGGCGTGAAGGAT TTGAGTTATCGGTTTCACCTCCGAGAGTCATGTACCCCTCTGATCTTCTCTTACAGTCTGTAATTTCCTTCATGGCTTATAAAGGTGGAGTAAAAATTCT TTTTTGGATCAGGTATAAAAATGAAAAGGGCCAGAAGTTGGAGCCAATTGAAGAAGTAACAATTGAGGTAAATGATGAACACGTGGGTTTAGCCATGGAA GCTCTATCCCACAGGAGAGCTGAAGTTGTCGATATGGGCCCTGTCCCTGGGAATGTTGGCAGGACTAGGTTGTCGTTAACATGTCCTTCAAGGGGTCTGG TTGGTTACAGGAGTGTGTTCAGCAGCGACACTCGTGGAACTGGATTCATGCATCGTGCCTTCCTGACATATGAAAAATTCCGTGGTCCACTAGGAAATGT CAGAAAGGGAGTCTTGGTGTCTATGGGATTTGGTACAATCACTGCTTATGCATTGGTCGGTTTGGAACCACGTGGGATACTCTTCGTTGGCCCTGGGGCA GAGACGTATGATGGCATGATTGTGGGTGAACATACGCGAGATTCAGATCTCGATGTCAATCCAGTCAGGGCTAAGGAACTGAGCAATATGCGATCAGCCA ATAAGGATGAAAATGTCAGACTATCTCCGGCTCGACTGATGACCCTTGAAGAAGCTATAGGTTACGTAGCTTCCGATGAGCTTATCGAGGTTACACCAAA AGCGATTAGGTTGAGGAAGAGATACCTTGAGGTTAACAAACGGAAAACAATGAGCAAGAGGCCAAAGGAATGA
AA sequence Show only first row Show all	>Lus10002179 pacid=23158748 polypeptide=Lus10002179 locus=Lus10002179.g ID=Lus10002179.BGIv1.0 annot-version=v1.0 MAGPLLRSIWSSAKNSISSSSSSSSPRSFIKPYISSRLAPLLSRHPGSSARAFSAAPSAAAQSSSPTAPNSGLDPSRLRNVAVIAHVDHGKTTLMDRLLR QCGADIPHERAMDSISLERERGITIASKVTAITWKENELNMVDTPGHADFGGEVELVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPLLLLNKVD RPSEEQLDFPVLYASAKEGWASSTFTKDPPAESRNMSDLLDAIIRHVPSPNARIDEPFQMLVSMMEKDFYLGRILTGRISSGTIHVGDRVHGLRSTDAGV EKIEEGKVVKLMKKKGTSMVLIDSAGAGDIISMAGMGKPSIGHTVANVEVTTPLPGVELDPPTISMTFSVNDSPLAGRDGTHLTAGKIGDRLMAEAETNL AINVLPGIGESYEVQGRGELQLGILIENMRREGFELSVSPPRVMYPSDLLLQSVISFMAYKGGVKILFWIRYKNEKGQKLEPIEEVTIEVNDEHVGLAME ALSHRRAEVVDMGPVPGNVGRTRLSLTCPSRGLVGYRSVFSSDTRGTGFMHRAFLTYEKFRGPLGNVRKGVLVSMGFGTITAYALVGLEPRGILFVGPGA ETYDGMIVGEHTRDSDLDVNPVRAKELSNMRSANKDENVRLSPARLMTLEEAIGYVASDELIEVTPKAIRLRKRYLEVNKRKTMSKRPKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10002179 [exp]	0	1
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10039896 [exp]	2.8	0.8759
AT2G45030			Translation elongation factor ...		Lus10018604 [exp]	3.5	0.8800
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10037481 [exp]	5.0	0.8816
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10037444 [exp]	6.8	0.8810
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10018858 [exp]	10.2	0.8663
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041555 [exp]	20.4	0.8698
AT4G20770			Pentatricopeptide repeat (PPR)...		Lus10038431 [exp]	25.5	0.8319
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	26.9	0.8683
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10011299 [exp]	28.8	0.8390
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019207 [exp]	30.6	0.8594

Compare expression of checked genes

Lus10002179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.