Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66130 235 / 1e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09670 226 / 3e-72 Oxidoreductase family protein (.1) AT1G34200 215 / 4e-68 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039898 [exp] 305 / 4e-105 AT1G66130 212 / 1e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001327 [exp] 233 / 6e-75 AT4G09670 484 / 1e-172 Oxidoreductase family protein (.1) Lus10013633 [exp] 230 / 1e-73 AT4G09670 486 / 4e-173 Oxidoreductase family protein (.1) Lus10005674 [exp] 228 / 4e-73 AT4G09670 437 / 9e-154 Oxidoreductase family protein (.1) Lus10020317 [exp] 48 / 3e-07 AT4G09670 69 / 2e-24 Oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G137300 [exp] 285 / 2e-95 AT1G66130 382 / 2e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G200300 [exp] 251 / 6e-82 AT4G09670 522 / 0.0 Oxidoreductase family protein (.1) Potri.005G200200 [exp] 249 / 1e-81 AT4G09670 521 / 0.0 Oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01408 [flax] [poplar] GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold
Representative CDS sequence Show only first row Show all	>Lus10002180 pacid=23158720 polypeptide=Lus10002180 locus=Lus10002180.g ID=Lus10002180.BGIv1.0 annot-version=v1.0 ATGAGGCAAGCTAAGAAAGTAACCAGAGCATTACTCTTGAACCAAAGCACAACGATCCACTCGATTTCCAGCGCATCATCATCCCCTGAAGAAGCCAAGC AATTCGCCGACACTAATGAGTTACCGGGGACGGTGAAGATATGTGGCAGCCACGAAGAAGTGATCAACAATCCGAACTTAGACGCCGTCTACGTACCGGT GCCAGTGGGGCAGCATTTGCGGTGGGGGGTGGCGGTTGCCGAGAGGAAGAAGCATCTACTGTTGGAGAAACCAGGAGCTGTTGATTTAGGGGAGCTGGAT AAAGTGCTGGAAGCTTGTGAAAGGAATGGCGTGCAGTTTATGGACACCACGATGTGGCTGCATCATCCGAGGACGAAGAAGATGGATGAGTTCATTTCCG ATCCGAAGCTCGTCGGCAAAATTGGGCTGATCCACACTACTTCAACGGCATACATCCCGCGCCAATTCTTCGAGACGGTACTTCCAGGAAGAGCAGCCAT GGATCCCTTAGGGGCATTAGGTCAATTAGGATGGTACGGCATCGGAGCAGTTCTCTGGGCGAAAGATTTCAATCTCCCAAGTTCAGTCACGGCTTTACCG GACATCACAAGGAGCTCCACTGGAATTATTCTCTCCTGCTCGGCACAGCTTCATTACGAAGATGAAGATAACACATTGGCGATGGTACACTGCTCTTTCC TCTCTCATATAACCATGGATCTTGAGATCGTCGGTGTCAACGGTTCTCTGTATATAGGGTATTTCCTGCTTCCTTACAGTGAAGAATCTGCAGAGTTCAC TTCACTTGGATGGCCAAGTTCGTTGACGGGGATTTGGGATGGAACGTGA
AA sequence Show only first row Show all	>Lus10002180 pacid=23158720 polypeptide=Lus10002180 locus=Lus10002180.g ID=Lus10002180.BGIv1.0 annot-version=v1.0 MRQAKKVTRALLLNQSTTIHSISSASSSPEEAKQFADTNELPGTVKICGSHEEVINNPNLDAVYVPVPVGQHLRWGVAVAERKKHLLLEKPGAVDLGELD KVLEACERNGVQFMDTTMWLHHPRTKKMDEFISDPKLVGKIGLIHTTSTAYIPRQFFETVLPGRAAMDPLGALGQLGWYGIGAVLWAKDFNLPSSVTALP DITRSSTGIILSCSAQLHYEDEDNTLAMVHCSFLSHITMDLEIVGVNGSLYIGYFLLPYSEESAEFTSLGWPSSLTGIWDGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10002180 [exp]	0	1
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10001453 [exp]	1.0	0.9712
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	3.5	0.9493
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10001645 [exp]	3.7	0.9554
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10014135 [exp]	4.2	0.9526
AT4G34090			unknown protein		Lus10041575 [exp]	6.5	0.9281
AT2G30570		PSBW	photosystem II reaction center...		Lus10024858 [exp]	7.9	0.9458
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10021662 [exp]	8.1	0.9461
AT3G47070			unknown protein		Lus10001204 [exp]	8.7	0.9467
AT3G61870			unknown protein		Lus10010112 [exp]	9.4	0.9379
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10008411 [exp]	10.0	0.9237

Compare expression of checked genes

Lus10002180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.