Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20090 310 / 5e-109 ROP2, ARAC4, ATROP2, ATRAC4 Arabidopsis RAC-like 4, RHO-related protein from plants 2 (.1) AT5G45970 308 / 4e-108 ATRAC2, ATROP7, ARAC2 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) AT3G51300 308 / 4e-108 ATRAC11, ROP1, ARAC11, ROP1AT, AtROP1 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) AT1G75840 306 / 1e-107 ATROP4, ATGP3, AT1G75840.1, ARAC5 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) AT4G35020 306 / 3e-107 ROP6, ARAC3, RHO1PS, ATROP6 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) AT2G17800 305 / 5e-107 ARAC1, ATGP2, ATRAC1, ROP3, AtROP3 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) AT4G35950 302 / 7e-106 ATRAC6, ATROP5, ARAC6, RAC2, AtROP7 RAC-like 2, RHO-RELATED PROTEIN FROM PLANTS 5, RAC-like 6 (.1) AT3G48040 291 / 2e-101 ROP10, ARAC8, ATROP10, ATRAC8 Arabidopsis RAC-like 8, RHO-related protein from plants 10 (.1) AT5G62880 291 / 2e-101 ARAC10, ATRAC10, AtROP11 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) AT2G44690 285 / 5e-99 ARAC9, AtROP8, ROP8 RHO-RELATED PROTEIN FROM PLANTS 8, Arabidopsis RAC-like 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039899 [exp] 355 / 1e-126 AT4G35020 324 / 1e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10015298 [exp] 311 / 4e-109 AT5G45970 347 / 9e-124 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Lus10033131 [exp] 308 / 4e-108 AT4G35020 361 / 4e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10034538 [exp] 306 / 4e-107 AT4G35020 359 / 2e-128 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10019786 [exp] 301 / 4e-105 AT4G35020 355 / 1e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10014123 [exp] 301 / 4e-105 AT4G35020 354 / 5e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10014258 [exp] 299 / 4e-104 AT3G51300 394 / 1e-141 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) Lus10025959 [exp] 298 / 6e-104 AT2G17800 355 / 2e-126 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Lus10034876 [exp] 292 / 3e-101 AT3G48040 356 / 2e-126 Arabidopsis RAC-like 8, RHO-related protein from plants 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G123800 [exp] 321 / 3e-113 AT1G75840 342 / 1e-121 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.019G092300 [exp] 313 / 4e-110 AT1G75840 337 / 9e-120 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.011G061500 [exp] 312 / 7e-110 AT5G45970 344 / 1e-122 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Potri.009G134600 [exp] 312 / 9e-110 AT1G75840 353 / 5e-126 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.004G174900 [exp] 309 / 1e-108 AT4G35020 360 / 8e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.005G242000 [exp] 307 / 8e-108 AT1G75840 359 / 2e-128 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.005G110700 [exp] 306 / 2e-107 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.007G061500 [exp] 306 / 2e-107 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.002G019500 [exp] 306 / 2e-107 AT1G75840 352 / 1e-125 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.015G073000 [exp] 302 / 1e-105 AT5G62880 354 / 7e-126 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10002181 pacid=23158727 polypeptide=Lus10002181 locus=Lus10002181.g ID=Lus10002181.BGIv1.0 annot-version=v1.0 ATGAGTACGCCTAGCAGGTTCATCAAGTGTGTGACTGTTGGAGATGGAGCTGTTGGGAAAACATGCATGCTCATCTCCTACACTAGCAACACTTTCCCAA CTGATTATGTTCCGACGGTGTTCGACAACTTCAGCGCGAATGTGACGGTGGATGGGAGCACGGTGAGCCTGGGATTATGGGACACGGCAGGACAAGAGGA TTACAACAGGTTGAGGCCATTGAGTTACAGAGGTGCTGATGTCTTCTTGCTGGCTTTCTCCCTCATCAGCCGGCCTAGCTTTGAGAATATCTCCAAAAAG TGGATCAATGAGCTGAGGCATTATGCTCCTACCATCCCAATTGTGCTTGTTGGAACCAAACTTGATTTGAGAGATGATAAGCAGTACCTGAGTGATCATC CCGGCGCCATTCGAATCACAACTGCACAGGCAACTAAAGAGCTGAAGAAGAAGATAGGTGCTGCAGTGTACATAGAGTGCAGCTCCAAGACTCAGCACAA CGTCAAGGCAGTGTTTGATGCTGCAATCAAGGTTGTTCTTCAGCCTCCAAAACAAAAGAAGAAGAGACTCAAGAACAATCGTCCCTGCTCCATTCTCTAA
AA sequence Show only first row Show all	>Lus10002181 pacid=23158727 polypeptide=Lus10002181 locus=Lus10002181.g ID=Lus10002181.BGIv1.0 annot-version=v1.0 MSTPSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVTVDGSTVSLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRPSFENISKK WINELRHYAPTIPIVLVGTKLDLRDDKQYLSDHPGAIRITTAQATKELKKKIGAAVYIECSSKTQHNVKAVFDAAIKVVLQPPKQKKKRLKNNRPCSIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10002181 [exp]	0	1
AT2G36570			Leucine-rich repeat protein ki...		Lus10017178 [exp]	2.8	0.9206
AT1G61667			Protein of unknown function, D...		Lus10018396 [exp]	3.2	0.8864
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10014358 [exp]	3.2	0.9244
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10024808 [exp]	3.6	0.9248
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10018726 [exp]	5.2	0.9208
AT1G14630			unknown protein		Lus10039139 [exp]	6.0	0.8894
AT1G01225			NC domain-containing protein-r...		Lus10005981 [exp]	10.7	0.9015
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	10.7	0.8728
AT3G56820			unknown protein		Lus10012105 [exp]	15.3	0.8673
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10029259 [exp]	15.7	0.8949

Compare expression of checked genes

Lus10002181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.