Plant FIBer expression Database

Lus10002182 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G55490 520 / 2e-179 GEX1, ATGEX1 gamete expressed protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039900
[exp]
999 / 0 AT5G55490 575 / 0.0 gamete expressed protein 1 (.1)
Lus10029726
[exp]
947 / 0 AT5G55490 572 / 0.0 gamete expressed protein 1 (.1)
Lus10042450
[exp]
761 / 0 AT5G55490 541 / 0.0 gamete expressed protein 1 (.1)
Lus10026220
[exp]
234 / 5e-72 AT2G44300 131 / 6e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Lus10001735
[exp]
0 / 1 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G137100
[exp]
678 / 0 AT5G55490 579 / 0.0 gamete expressed protein 1 (.1)
PFAM info
Representative CDS sequence
>Lus10002182 pacid=23158747 polypeptide=Lus10002182 locus=Lus10002182.g ID=Lus10002182.BGIv1.0 annot-version=v1.0
ATGTCTCACCAGTATGAACGTCATCTTTTGTTGATGCTCCTTGTTTTGATCATATCAACTTCTGGTTGCCAGTCATGGGGATGGTTCTCTTCTTCTGCTT
CTGGCGATGATTCTGGTTATGCTTCTGGTGATGAATACCGCTTTTCTGGGGTTTCGGTGGCCCAGTTTTCATTGGATTTCCCTGCAGATCATAAGGGATT
AGTAGAGAAAGCAAGGAACAAACTAGTTGGTTCCAACACTTGCTGGCAGAACGCTTACCACCATATCTTTTCTGGCTGCAGTCAAATCAACGCCAACGAA
GACAAACGCAAGAGATTCGCTTGGCATCTCAGTGATTGCTTCCAGAAAGATTCCGGGAGGCGGCCTTTCCCCAACTGCGATGAGAAATCGGCCATGTTTC
ACTGCCTGAAGAAGTTGGATGATCACGAACACAAGGTCTATCTCGAGTTTTTCACCGAAACAAATTCCATCTGCTACCATTTACAAGTGCATGCATTCAA
ACGCGAGACAGAGAGGCTGGTGAATGAGCTTAAAAGTTCAGCGCAATACACGGAGGAACAACTGGAGACTATTAAGGACAGAACGGTCACATTACTGCAG
AACTCGAATCTCATTCACGATTCGTTGAGTTCGGTGGATGATAAAGTTCAGCGCGTGATTCAGACGAGTAAAGGAGTGGAGGATCAGATTCATACCTTGT
CGAAGCAGTCGGAAGCGGTTTATAAACAATCGGAGGATATCGTGAGGTCACAGACGGAACTGCAAGCGGGACAAGAAGAGATGAATGAGAATTTGAAAGA
AGGGGTGAAGATGCTTCAAGATGCTTACAGTAATTTGGGGGAGGAAGTGAGTAACCTGAGGAATGAAGCTGTAGAGATAGAGAAGCAGATTGACAGAGTT
GGAGACTCGATGTTGTCAAGGTTTCGGAATCTGCAATCAAAAGCTGATGATATCGAGAACATGGCGGGGAGTTCGTTGAGCAAGCAACAAGAGCTTCTAG
ATGGACAGTCCATGGCGCTTAAAGGTCTCGAAAGCCTGACGAAATCTCAATCTGTAGCACTGCAAGAAAGCAGGAATGCAATGCAACATTTGGCTGATTT
GGGTCGTCAACAGCAGGAAGAGCTTCTTCAAAGGCAGAAACAGCTTCAGCAAGTTCATGATCACTTAGTTTCGAATTCAAAATCGATATTGGAAGCACAG
GAAGCATTTGAAGCGAAGCAAGCTAGCATGTTTATTGCTCTAGACAAGCTGTTTGAACTACACAATGCAATGTTGCTCGAATCTCGAGTAATCAAGGCTT
TCTTCATCTACACCATGTCAATTTTCATCATCTACATGTTTACCAGTACAAAGCAGACATACCCAGTCAGAGCCAATCTCTATCTCGGGTTGTGTACTAC
ATTCCTCGTGGAAGTAGCAATCATTCGACTTACACCAAGTGGTGATCTAGAGCGACAAACCTGGATGATTAATCTGGCGAGGCTGCTATTTGCTTTCCTG
GCGATTCTTCAGATCCTTTATGCCATTTACACATACAGGGACTATGAAGTATTGAATCATCACATGATCCTGACATTGACGGAGAAAATCAATTCGATGA
AAAGAAGCAAAGAGATTTCATGGGAAAGCGATAGTGAAGTGGACTGGTCAACATGGGTTGAAGAGGAGTTACCGGAAGAAGTTGCCAGCTCGGAGGATCC
GGATTACATGATTCCAGAAGAAACTGCTGCTGCTGCTGCTGATAGATCGATTGTGAGTGTTCCGGCGACGAGAAAGTACGATCTCCGTCAACGAAACCGT
TTCAGCTGA
AA sequence
>Lus10002182 pacid=23158747 polypeptide=Lus10002182 locus=Lus10002182.g ID=Lus10002182.BGIv1.0 annot-version=v1.0
MSHQYERHLLLMLLVLIISTSGCQSWGWFSSSASGDDSGYASGDEYRFSGVSVAQFSLDFPADHKGLVEKARNKLVGSNTCWQNAYHHIFSGCSQINANE
DKRKRFAWHLSDCFQKDSGRRPFPNCDEKSAMFHCLKKLDDHEHKVYLEFFTETNSICYHLQVHAFKRETERLVNELKSSAQYTEEQLETIKDRTVTLLQ
NSNLIHDSLSSVDDKVQRVIQTSKGVEDQIHTLSKQSEAVYKQSEDIVRSQTELQAGQEEMNENLKEGVKMLQDAYSNLGEEVSNLRNEAVEIEKQIDRV
GDSMLSRFRNLQSKADDIENMAGSSLSKQQELLDGQSMALKGLESLTKSQSVALQESRNAMQHLADLGRQQQEELLQRQKQLQQVHDHLVSNSKSILEAQ
EAFEAKQASMFIALDKLFELHNAMLLESRVIKAFFIYTMSIFIIYMFTSTKQTYPVRANLYLGLCTTFLVEVAIIRLTPSGDLERQTWMINLARLLFAFL
AILQILYAIYTYRDYEVLNHHMILTLTEKINSMKRSKEISWESDSEVDWSTWVEEELPEEVASSEDPDYMIPEETAAAAADRSIVSVPATRKYDLRQRNR
FS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G55490 GEX1, ATGEX1 gamete expressed protein 1 (.1... Lus10002182
[exp]
0 1
AT3G51070 S-adenosyl-L-methionine-depend... Lus10028354
[exp]
3.9 0.8703
AT3G56320 PAP/OAS1 substrate-binding dom... Lus10034219
[exp]
4.9 0.8360
AT2G38290 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammo... Lus10028397
[exp]
6.5 0.8520
AT3G21090 ABCG15 ATP-binding cassette G15, ABC-... Lus10027353
[exp]
9.5 0.8577
AT5G09880 Splicing factor, CC1-like (.1) Lus10000826
[exp]
12.0 0.8150
AT3G60330 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase... Lus10028201
[exp]
13.6 0.8376
AT4G13450 Adenine nucleotide alpha hydro... Lus10023716
[exp]
14.1 0.8301
AT2G45910 U-box domain-containing protei... Lus10018835
[exp]
14.8 0.8448
AT2G44290 Bifunctional inhibitor/lipid-t... Lus10017749
[exp]
19.2 0.8250
AT5G58170 GDPDL7, SVL5 Glycerophosphodiester phosphod... Lus10040036
[exp]
21.8 0.8168

Lus10002182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.