Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42390 194 / 5e-63 protein kinase C substrate, heavy chain-related (.1) AT5G56360 150 / 2e-42 PSL4 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039901 [exp] 183 / 1e-55 AT1G06260 346 / 4e-117 Cysteine proteinases superfamily protein (.1) Lus10010326 [exp] 144 / 8e-40 AT5G56360 604 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Lus10026874 [exp] 142 / 5e-39 AT5G56360 236 / 1e-68 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Lus10013398 [exp] 140 / 2e-38 AT5G56360 611 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G092100 [exp] 232 / 4e-78 AT2G42390 204 / 6e-67 protein kinase C substrate, heavy chain-related (.1) Potri.013G124000 [exp] 220 / 2e-73 AT2G42390 215 / 3e-71 protein kinase C substrate, heavy chain-related (.1) Potri.013G060266 [exp] 152 / 2e-46 AT5G56360 218 / 3e-67 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.001G001700 [exp] 158 / 4e-45 AT5G56360 539 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.003G223000 [exp] 151 / 2e-42 AT5G56360 587 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002183 pacid=23158730 polypeptide=Lus10002183 locus=Lus10002183.g ID=Lus10002183.BGIv1.0 annot-version=v1.0 ATGGATCCGGGTCGTTGTAGTTTCGGGGCCCAGCTAATTGCCACATTGATCTGTTGCTTCTTCCACTTTCTCCCGCCCTCCTCCTCCGCCGCCGTCCAAA CGTCGCCGCCGCTTCTCGGCGTCCACCCTTTAGATGAGAAGTACTTTACTCCCCCGGTGATCAAGTGCAAAGACGGATCCAAGTCTTTCTCCAGAGACCG GCTCAACGACGATTTCTGCGATTGCGTCGACGGCACCGATGAGCCTGGCACTTCAGCTTGTCCAGCTGCCAAATTTTACTGCAGGAATGTAGGAAGTACA CCAAAGTTTATATACTCTTCTCGTGTTAACGACCAAGTTTGCGATTGCTGCGATGGAAGTGATGAATACGGCAGCGAAGTCAACTGCCCCAACACATGCT TCATGGGTGGGAGCATGGAGTACAAGGCTGGAAGCTATCTGTCTTATCTTGATGCCAAAAGAACGAAAGATGCAAACGACTGGAAGAAGGCTAGTTTAGA GGAATTGCTGCATACAGTTACAGGGTTGAAGATGATAATTCTACTTCAAGCGTTACTTGTTGCTGCTGTGGTTATCTTCAAGATATTCAAGAGACGTGTT AAGGCCAAGAGAAGGCATCATCATCGCTAG
AA sequence Show only first row Show all	>Lus10002183 pacid=23158730 polypeptide=Lus10002183 locus=Lus10002183.g ID=Lus10002183.BGIv1.0 annot-version=v1.0 MDPGRCSFGAQLIATLICCFFHFLPPSSSAAVQTSPPLLGVHPLDEKYFTPPVIKCKDGSKSFSRDRLNDDFCDCVDGTDEPGTSACPAAKFYCRNVGST PKFIYSSRVNDQVCDCCDGSDEYGSEVNCPNTCFMGGSMEYKAGSYLSYLDAKRTKDANDWKKASLEELLHTVTGLKMIILLQALLVAAVVIFKIFKRRV KAKRRHHHR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42390			protein kinase C substrate, he...		Lus10002183 [exp]	0	1
AT1G72510			Protein of unknown function (D...		Lus10013156 [exp]	26.3	0.8497
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10029797 [exp]	28.8	0.8162
AT2G21720			Plant protein of unknown funct...		Lus10010668 [exp]	45.6	0.8337
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Lus10039904 [exp]	47.6	0.8357
AT3G12620			Protein phosphatase 2C family ...		Lus10019893 [exp]	49.3	0.8208
AT5G14010	C2H2ZnF	KNUCKLES, KNU	KNUCKLES, C2H2 and C2HC zinc f...		Lus10011884 [exp]	62.2	0.8330
AT3G08610			unknown protein		Lus10010288 [exp]	62.3	0.8063
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036782 [exp]	67.0	0.8297
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009959 [exp]	67.2	0.8265
AT1G06260			Cysteine proteinases superfami...		Lus10017674 [exp]	74.6	0.7701

Compare expression of checked genes

Lus10002183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.