Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06260 384 / 1e-133 Cysteine proteinases superfamily protein (.1) AT3G48340 347 / 6e-119 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT5G43060 333 / 7e-112 Granulin repeat cysteine protease family protein (.1) AT5G45890 324 / 5e-110 SAG12 senescence-associated gene 12 (.1) AT1G47128 320 / 5e-107 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT3G19390 317 / 6e-106 Granulin repeat cysteine protease family protein (.1) AT5G50260 311 / 6e-105 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT4G36880 301 / 8e-101 CP1 cysteine proteinase1 (.1) AT4G35350 300 / 2e-100 XCP1 xylem cysteine peptidase 1 (.1.2) AT3G48350 299 / 5e-100 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039901 [exp] 573 / 0 AT1G06260 346 / 4e-117 Cysteine proteinases superfamily protein (.1) Lus10017674 [exp] 385 / 4e-134 AT1G06260 310 / 2e-104 Cysteine proteinases superfamily protein (.1) Lus10032406 [exp] 361 / 1e-124 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10026073 [exp] 360 / 3e-124 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10028501 [exp] 360 / 4e-124 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020723 [exp] 357 / 3e-123 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1) Lus10003275 [exp] 355 / 4e-122 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 352 / 4e-121 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10042295 [exp] 351 / 7e-121 AT5G45890 402 / 7e-141 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088600 [exp] 355 / 4e-122 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 354 / 4e-122 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 353 / 2e-121 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 353 / 3e-121 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 353 / 3e-121 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 349 / 7e-120 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 340 / 2e-116 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 337 / 6e-116 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.014G024100 [exp] 341 / 3e-115 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.013G126100 [exp] 337 / 4e-115 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10002184 pacid=23158724 polypeptide=Lus10002184 locus=Lus10002184.g ID=Lus10002184.BGIv1.0 annot-version=v1.0 ATGGTCACCTACATGCTGCTAGTTGCGAGCATCCTTTGTGTCCATGCCATGGCCAGCTCCAGCGATCTCGATCCGACGGTGATGAGCGAGAGGTACAACA AGTGGATGTCGATGCATGGACGAAAGTACAAGGACCGAAACGAATATTATCACCGGTTCCAGATATACCAGTCCAACGTTCATTACATCAACTATATCAA TTCTAAGAACCTGTCCTTCCAGCTCACTGACAACAAGTTTGCCGATCTGACCAACGACGAGTTCAAGGCGAGGTACCTCGGTCTTACCCCGCCAAGGTCG GTTCATAAGCACAAGGAATGTACCTGCGAAGGGGTATCCAAACCGTTGCCTGCTCAAGTCGATTGGAGGAAAAGTGATGCCGTCACCAAAGTCAAAGATC AAGGCAACTGTGGGAGCTGTTGGGCGTTCTCTGCGGTGTCAGCAATCGAAAGTCTCAACAAAATCAAAACAGGAAAACTCTTGACCCTCTCGGAGCAACA ACTCGTTGATTGTGACGTAGATGGCGAAAACGAAGGATGCAATGGCGGGTTCATGAACGATGCGTTCGAGTTCATCCGTGAGACTGGCGGGCTCACTACT GAGAAGAACTATCCTTACATAGGAAGAGACGGTAAGTGCGACAGAAAGAAGCTGAAAGATCTTGATGTAAAAATAACTGGTTATGTAGTCGTGCCTGCCA ACAACGAAACGGCGCTCCAAGCTGCCGTCGCGAAACAACCCGTCTCAGTAGCCATCGATGCTGGTAGCTATTCGTTCCAGTTTTACTCTAGCGGTGTGTT CACCGATTCGTGCGGATCGAACCTCAACCACGGAGTTGCTGTCGTTGGATATGGTACGGAAGGTGGGAAGAAGTACTGGATCGTGAGAAATTCGTGGGCG TCTGATTGGGGAGAAAACGGATATATTCGATTGGAACGTGATATTTATACTAGAGGTGGTAAGTGTGGCATTGCCATGATGGCAAGTCACCCTGTTTAG
AA sequence Show only first row Show all	>Lus10002184 pacid=23158724 polypeptide=Lus10002184 locus=Lus10002184.g ID=Lus10002184.BGIv1.0 annot-version=v1.0 MVTYMLLVASILCVHAMASSSDLDPTVMSERYNKWMSMHGRKYKDRNEYYHRFQIYQSNVHYINYINSKNLSFQLTDNKFADLTNDEFKARYLGLTPPRS VHKHKECTCEGVSKPLPAQVDWRKSDAVTKVKDQGNCGSCWAFSAVSAIESLNKIKTGKLLTLSEQQLVDCDVDGENEGCNGGFMNDAFEFIRETGGLTT EKNYPYIGRDGKCDRKKLKDLDVKITGYVVVPANNETALQAAVAKQPVSVAIDAGSYSFQFYSSGVFTDSCGSNLNHGVAVVGYGTEGGKKYWIVRNSWA SDWGENGYIRLERDIYTRGGKCGIAMMASHPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06260			Cysteine proteinases superfami...		Lus10002184 [exp]	0	1
AT3G21720		ICL	isocitrate lyase (.1)		Lus10031552 [exp]	9.4	0.9999
AT1G71120		GLIP6	GDSL-motif lipase/hydrolase 6 ...		Lus10035266 [exp]	11.2	0.9936
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	13.3	0.9999
AT3G49055			unknown protein		Lus10011651 [exp]	16.3	0.9999
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031280 [exp]	18.8	0.9952
					Lus10022996 [exp]	18.9	0.9999
					Lus10001326 [exp]	21.1	0.9999
					Lus10026755 [exp]	23.1	0.9999
					Lus10004351 [exp]	25.0	0.9999
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10006093 [exp]	26.7	0.9999

Compare expression of checked genes

Lus10002184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.