Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58120 193 / 8e-60 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G42380 191 / 6e-59 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G58110 94 / 9e-22 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G43700 91 / 6e-21 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT2G40620 87 / 2e-19 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G38900 87 / 3e-19 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G06850 85 / 3e-19 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT1G06070 86 / 7e-19 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G31370 84 / 3e-18 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT2G21230 82 / 2e-17 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017656 [exp] 208 / 8e-66 AT2G42380 305 / 1e-103 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10033630 [exp] 207 / 2e-65 AT2G42380 294 / 7e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10039902 [exp] 181 / 6e-56 AT3G58120 181 / 8e-56 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008605 [exp] 90 / 2e-20 AT2G40620 276 / 1e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10028595 [exp] 90 / 2e-20 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10042802 [exp] 90 / 2e-20 AT1G43700 313 / 1e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10024204 [exp] 90 / 2e-20 AT1G06850 271 / 5e-90 basic leucine-zipper 52 (.1.2) Lus10029773 [exp] 90 / 2e-20 AT1G43700 311 / 6e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10009907 [exp] 89 / 2e-20 AT1G06850 270 / 2e-89 basic leucine-zipper 52 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G091900 [exp] 210 / 2e-66 AT3G58120 285 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 199 / 3e-62 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G374200 [exp] 189 / 5e-58 AT3G58120 282 / 6e-94 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G074900 [exp] 94 / 9e-23 AT2G42380 87 / 3e-20 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.005G190700 [exp] 92 / 4e-21 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.019G130000 [exp] 92 / 4e-21 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.003G014800 [exp] 92 / 5e-21 AT1G58110 304 / 3e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.013G091400 [exp] 91 / 6e-21 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G069500 [exp] 91 / 6e-21 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.013G156900 [exp] 90 / 4e-20 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF07716 [flax] [poplar] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Lus10002185 pacid=23158734 polypeptide=Lus10002185 locus=Lus10002185.g ID=Lus10002185.BGIv1.0 annot-version=v1.0 ATGAATTCCTCGACTTCTCCTCCGCCAGGCGCGGGAACCACCGGAGGTCCGTCAGTGACGGATCCGTGGCCTTCCTCGAGATCCCAATGCTCGACGACGG TCATCACCACCGAGATTTCGAGAGATTCGACGACGAGCAGTTCATGTCAATGTTCTCCGTCGACGACATGTCGAACAGCATTGCCGCCGGAGGCGGTGGG GATCCCTGCCGCCGGAGGCGGTGGCAATCCTGCATCGTCTTCCAACCCTTCATCTCCTTCCGATCACAACAGCATTAACGACGAGAAGGAAGCTATTCCC GCAGCCGTTGGCTGCGGCGGCTTTGGGCAGCAGGAAAGGAAAATGGTGATGAAGATGGACGCCGATGAGGAACAGAGCCCAAGCGAATCAGACTATTCCC AGCAAACGACGCCGTCTAATGGCAACAATAGTAATAATTCCGACCGGATTGTGGACCCCAAGAGGGTGAAGAGAATTCTGGCGAATAGGCAATCGGCGCA ACGATCTCGGGTGAGGAAGCTGCAGTACATATCGGAGCTTGAACGGAGCGTTACTTCTTTACAGGCGGAAGTATCTGTGTTATCGCCTAGAGTTGCATTC TTGGACCATCAAAGATTGCTCCTCAACGTAGATAACAGTGCTTTGAAGCAACGGATCGCAGCTCTTGCTCAAGATAAGATCTTCAAAGATGCTCATCAAG AGGCGCTGAAGCGGGAAATAGAGAGATTGAGGGAAGTATACTACCAACAGCAGCAGAACCTCAAGAACCTGGATTCTAATAACAACTCATCATCATCATC AGGCCAAGCTAATGAACAACCCAACATAACAGCAGAAAAAGAGCAGCAGCAGCAGCTTCTCCAAGTCTAA
AA sequence Show only first row Show all	>Lus10002185 pacid=23158734 polypeptide=Lus10002185 locus=Lus10002185.g ID=Lus10002185.BGIv1.0 annot-version=v1.0 MNSSTSPPPGAGTTGGPSVTDPWPSSRSQCSTTVITTEISRDSTTSSSCQCSPSTTCRTALPPEAVGIPAAGGGGNPASSSNPSSPSDHNSINDEKEAIP AAVGCGGFGQQERKMVMKMDADEEQSPSESDYSQQTTPSNGNNSNNSDRIVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAF LDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLREVYYQQQQNLKNLDSNNNSSSSSGQANEQPNITAEKEQQQQLLQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10002185 [exp]	0	1
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10039902 [exp]	1.0	0.9886
AT5G15140			Galactose mutarotase-like supe...		Lus10005251 [exp]	2.4	0.9699
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10031470 [exp]	2.4	0.9715
AT1G47740			PPPDE putative thiol peptidase...		Lus10011291 [exp]	3.5	0.9645
AT3G07010			Pectin lyase-like superfamily ...		Lus10011885 [exp]	5.9	0.9644
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10013693 [exp]	10.2	0.9578
AT1G06930			unknown protein		Lus10009096 [exp]	11.5	0.9201
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10022851 [exp]	11.8	0.9257
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	12.2	0.9602
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10018765 [exp]	12.4	0.9537

Compare expression of checked genes

Lus10002185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.