Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58110 288 / 7e-87 unknown protein AT2G42370 195 / 3e-53 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039903 [exp] 858 / 0 AT3G58110 394 / 3e-126 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G119700 [exp] 399 / 2e-128 AT3G58110 388 / 5e-123 unknown protein Potri.019G091700 [exp] 398 / 8e-128 AT3G58110 226 / 6e-63 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002186 pacid=23158739 polypeptide=Lus10002186 locus=Lus10002186.g ID=Lus10002186.BGIv1.0 annot-version=v1.0 ATGGAAGCCTCCCCCCCAACAGCCTTCTCCGCCACCTCCGCCTTTACCCTCCGCGGCGGTGGAAGTTTGAAGAGGAACAAGAGCAAGCGATTTGCAGCCG CTAAGGTCAAGAAGCTTCAGAAGAAGCTCGAGAGTCTCAACGAGAATCTCAACCCCATCCCTTTCAAGCCGGCCAAAGATCTAGATTTTGCTTCTCACAA GGAGCTTCTCAAGAGGCTGGGACTGTGGGACTTCGTCAATACAAAGTTCGACGCCAATCTCCGCGCCGATCTTGTGTCGCAGCTGATTGCCAGTTACGAT CAGCAGCAGCGCGCTAGCTACGTCAATGAAGCTCGCGTTAGGGTTAGCCGTGCTGACTTAGGCCGAGCTCTTAAATTGCCGGCGAAGAAGGATAAGGTTT CAGCTTCTTCGGAGGAGGAGGTGAAGAAGGAGAGTGAAGAAGAGATTGCGTTCGTCGGTGAATTAGTGTCGACTTGGATGCTGTTGCACGAGGATACTTG GATGATGCCGTCAGAGATTCAAAACTGGACGAAAATGATCAAAGAAGGGATCTTCGAGAGAGTGGATTGGGCTGGATTGATTTGGTGTATGGTTGAGAAG GAACTTTCGGCTGCTCCCAACTTAGGTAACTGTTACTACGCCTCTCACTTGCAGTGTTTGATAAAATACCAGAAAGAAAATATGTTGAGGGAAGAGGAGT CTATACAAGTGGAGGAAGATATAGTAGAGGAAGTCGTGAAAACGAGTGAAAAGTTTCATGTGGTCACTGAGTTGAAAGAGGACATCATTGAATTGAGTTT GGGAGGGTTGGATAGTGATTTGAAAGACAGTACTGTAGATGTCAGTGAAAAGGGGAAAGAAGATTTAGTCCAAGAGCAGGCAATGGATAAAGAAGTAGTA GAAGAACGGGGGGAGGAGTGGTTCAAGAGCAGTATGGATGAGAGTTTTCTGCAACATTGTAGTGTTGCAAAAGCCGACAACTTGGACTGCAAAGAGGAGA CGAAGCAAGAAACCGAGCAAGATGTTGTGATGAACGAAGCGGAGGAAGGGCAGGGTGCTGAAATGGAGGATGTGGAAGAAATGGATTTCGACCGCTCTCC CAAAGAGGACGATGACACATTGAATGGTGTAGATTCCGAGAATCTTCTTGCATCTCTGGAGCTTCATGATAACCTCACATCGGGCGACTTTCTTGCAGCT AGGATTGATGTCGAGACTAATAACCGCCATGGTAGTTCTTCACTTTATAGCAATGGAAACGGTTATAAGAGGGATATTGGGCAGCTAGACGATGACGAAG ATGGTGATATCCCTCATCATGCATTCGACAAGAGGATTCGGAGTGACGAGCAGCACCAGCAATATGGGGTGGGGAAGGTGGTTGCTTCAGAGACTGAAGT AGACTACGAACAAATGCAGTATTTGATCAACAAAACCAGGGCGTCACATATGGAAAAGGAGAGGGATTTACAAGAGGCGAGCATGAATTACCAGCAGTTA CTTAACGAAGTGCAGGCACGAGACGACATGATTCAGCACCTGCACAGGATCAGTTACGAGGAGCAACGGAAGAGAGATATGGAAATCTGTAAGCTTGAGC GTGAACTACATATGATGGGGAATCTCTTGGAAGGGTATAGAAAGGCTCTGAAGGAGACACATAAATCCTTTGCCGAGTACAGAGCGAAATGCCCTTTCCC TGAAGAACCACTATACAAGGACTCTGGCCTTGGTGGTCTTGTTCTGACTGCTGCTGAAGTTGAGAAGTTGAGAAAAGAGGAAGAGGAGAGGTTGAATCGT TTGTGTATTGAGAAGAAGGTTAAAGAATTTGAGGAAGAATGGGTTGGCAAGTTTCAAGCACACGAGGAGAGGATCGAATTGCTGGGAGGAAGGTTGCTTG ACACGGAGACGAATGTCAATATCTTGAAGGAAATGCACGTAAAGCGTTCGGCCTGTTTGACCTCTTCTCCGATTGTGGAATGCCCTCCAACCGCCGAGTA G
AA sequence Show only first row Show all	>Lus10002186 pacid=23158739 polypeptide=Lus10002186 locus=Lus10002186.g ID=Lus10002186.BGIv1.0 annot-version=v1.0 MEASPPTAFSATSAFTLRGGGSLKRNKSKRFAAAKVKKLQKKLESLNENLNPIPFKPAKDLDFASHKELLKRLGLWDFVNTKFDANLRADLVSQLIASYD QQQRASYVNEARVRVSRADLGRALKLPAKKDKVSASSEEEVKKESEEEIAFVGELVSTWMLLHEDTWMMPSEIQNWTKMIKEGIFERVDWAGLIWCMVEK ELSAAPNLGNCYYASHLQCLIKYQKENMLREEESIQVEEDIVEEVVKTSEKFHVVTELKEDIIELSLGGLDSDLKDSTVDVSEKGKEDLVQEQAMDKEVV EERGEEWFKSSMDESFLQHCSVAKADNLDCKEETKQETEQDVVMNEAEEGQGAEMEDVEEMDFDRSPKEDDDTLNGVDSENLLASLELHDNLTSGDFLAA RIDVETNNRHGSSSLYSNGNGYKRDIGQLDDDEDGDIPHHAFDKRIRSDEQHQQYGVGKVVASETEVDYEQMQYLINKTRASHMEKERDLQEASMNYQQL LNEVQARDDMIQHLHRISYEEQRKRDMEICKLERELHMMGNLLEGYRKALKETHKSFAEYRAKCPFPEEPLYKDSGLGGLVLTAAEVEKLRKEEEERLNR LCIEKKVKEFEEEWVGKFQAHEERIELLGGRLLDTETNVNILKEMHVKRSACLTSSPIVECPPTAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58110			unknown protein		Lus10002186 [exp]	0	1
AT3G58110			unknown protein		Lus10039903 [exp]	1.0	0.8883
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10013179 [exp]	3.2	0.7942
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Lus10015996 [exp]	5.9	0.7707
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Lus10041890 [exp]	6.0	0.7734
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10018640 [exp]	6.2	0.7860
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10037698 [exp]	7.2	0.7818
AT2G02510			NADH dehydrogenase (ubiquinone...		Lus10005182 [exp]	7.5	0.7636
AT3G60850			unknown protein		Lus10004021 [exp]	7.7	0.7444
AT2G28105			unknown protein		Lus10021424 [exp]	8.4	0.7767
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10008701 [exp]	9.3	0.6925

Compare expression of checked genes

Lus10002186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.