Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02050 560 / 0 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT4G00040 523 / 0 Chalcone and stilbene synthase family protein (.1) AT4G34850 466 / 3e-164 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT5G13930 256 / 6e-82 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT1G71160 52 / 4e-07 KCS7 3-ketoacyl-CoA synthase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039904 [exp] 699 / 0 AT1G02050 577 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10026286 [exp] 479 / 2e-169 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10042388 [exp] 478 / 5e-169 AT4G34850 636 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10023670 [exp] 266 / 1e-84 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10031622 [exp] 253 / 1e-80 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 244 / 3e-77 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 244 / 3e-77 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10041508 [exp] 183 / 2e-54 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011745 [exp] 162 / 8e-48 AT5G13930 389 / 6e-137 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G056300 [exp] 594 / 0 AT1G02050 595 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Potri.002G141400 [exp] 589 / 0 AT1G02050 618 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Potri.009G128800 [exp] 478 / 5e-169 AT4G34850 631 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Potri.004G167300 [exp] 477 / 1e-168 AT4G34850 637 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Potri.001G051500 [exp] 268 / 1e-86 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 266 / 1e-85 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 265 / 3e-85 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 264 / 4e-85 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 260 / 1e-83 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G145100 [exp] 259 / 3e-83 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02797 [flax] [poplar] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain CL0046 [flax] [poplar] Thiolase PF00195 [flax] [poplar] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002187 pacid=23158722 polypeptide=Lus10002187 locus=Lus10002187.g ID=Lus10002187.BGIv1.0 annot-version=v1.0 ATGTCACATACCGGCAATGGCGCTCCTGCTACTAAGCGGACTCCAATGCCAGGAAAGGCCACTCTCCTCGCAATCGGCAAAGCCTTCCCTAGCCAGCTCA TCCCTCAAGAATGCCTCGTCGAAGGTTACATGCGTGACACCAACTGCTACGACTCTTCCATCAAGGAAAAACTCGAACGACTTTGCAAGACCACAACAGT GAAGCGAAGATTCACAGTGATGTCCAAGGAGATCCTGGACAAGTACCCTGAGTTGGCAACCGAGGGTTCCCCAACAATTAGGCAAAGGCTCGAAATAGCA AACCCAGCTGTAGTTGACATGGCAGCGGATGCCAGCCTGGCGTGCATCAAGGAGTGGGGGAGGCCAGTGGAGGACATTACCCACATTGTCTACGTGTCCT CCAGTGAGATCCGCCTACCTGGCGGTGACCTCCACCTGTCAAGCCGACTCGGCCTACGAAATGATGTCGGACGCGTGATGCTTTACTTCCTCGGGTGCTA CGGAGGCGTCACGGGGCTCCGAGTCGCCAAGGACATCGCGGAGAACAACCCGGGTAGCCGGGTCCTGTTGACCACCTCGGAGACCACGATCCTCGGATTT CGCCCGCCGAACAAGTCCCGCCCTTACGACCTCGTCGGAGCGGCGCTGTTCGGGGATGGAGCGGCGGCGGTGGTGGTGGGTACTGACCCGGTGGAAGCTC AGCAGGTGGGAGAGAAAGAGGATGCGTTCATGGATCTGATGGTGGCGGCGCAGGAGTTCCTCCCCGGGACGGAATCGGTGATCGACGGGAGGTTGTCGGA GGAAGGGATTTACTTCAAGCTGGGGAGGGATCTGCCGGAGAAGATTGAGGACAATATTGAAGGGTTTTGCAAGAAATTGATTAGGAAAGGTGGGTTGGGG GAAGCGGTTGGGTTTAACGAGCTTTTCTGGGCGGTTCATCCGGGTGGGCCGGCGATACTGAACCGGTTGGAGAGCAAGCTTGGGTTGAAAGAAGGGAAGC TGGAGTGTAGCAGGAAGGCGTTGATGGATTATGGGAATGTGAGCAGTAACACTGTGTTTTATGTGATTGAGTACATGAGGGAAGCGCTTGAGATGAAGAA GAAGAAGAATGGAGGAAAGGAAGAAGAAGATGAAGAATGGGGATTGGCTTTGGCTTTTGGACCTGGGATCACCTTTGAAGGCATACTTCTTCGCAGCTTA TAA
AA sequence Show only first row Show all	>Lus10002187 pacid=23158722 polypeptide=Lus10002187 locus=Lus10002187.g ID=Lus10002187.BGIv1.0 annot-version=v1.0 MSHTGNGAPATKRTPMPGKATLLAIGKAFPSQLIPQECLVEGYMRDTNCYDSSIKEKLERLCKTTTVKRRFTVMSKEILDKYPELATEGSPTIRQRLEIA NPAVVDMAADASLACIKEWGRPVEDITHIVYVSSSEIRLPGGDLHLSSRLGLRNDVGRVMLYFLGCYGGVTGLRVAKDIAENNPGSRVLLTTSETTILGF RPPNKSRPYDLVGAALFGDGAAAVVVGTDPVEAQQVGEKEDAFMDLMVAAQEFLPGTESVIDGRLSEEGIYFKLGRDLPEKIEDNIEGFCKKLIRKGGLG EAVGFNELFWAVHPGGPAILNRLESKLGLKEGKLECSRKALMDYGNVSSNTVFYVIEYMREALEMKKKKNGGKEEEDEEWGLALAFGPGITFEGILLRSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Lus10002187 [exp]	0	1
AT4G33840			Glycosyl hydrolase family 10 p...		Lus10020985 [exp]	1.0	0.9989
					Lus10028932 [exp]	15.3	0.9956
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10005302 [exp]	17.5	0.9758
AT3G21720		ICL	isocitrate lyase (.1)		Lus10031552 [exp]	18.8	0.9953
					Lus10033811 [exp]	21.8	0.9953
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	24.4	0.9953
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10023221 [exp]	26.7	0.9953
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	28.9	0.9953
					Lus10026755 [exp]	30.9	0.9953
					Lus10003843 [exp]	32.7	0.9953

Compare expression of checked genes

Lus10002187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.