Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23640 83 / 2e-19 RTNLB13 Reticulan like protein B13 (.1) AT5G41600 83 / 6e-19 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT4G23630 75 / 7e-16 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT1G64090 71 / 9e-15 RTNLB3 Reticulan like protein B3 (.1.2) AT3G61560 71 / 1e-14 Reticulon family protein (.1.2) AT2G15280 70 / 1e-14 Reticulon family protein (.1.2) AT4G11220 71 / 2e-14 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT3G18260 69 / 4e-14 Reticulon family protein (.1) AT2G46170 69 / 6e-14 Reticulon family protein (.1.2) AT3G19460 62 / 2e-11 Reticulon family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039905 [exp] 309 / 1e-107 AT2G23640 95 / 4e-24 Reticulan like protein B13 (.1) Lus10027548 [exp] 79 / 3e-17 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10027546 [exp] 77 / 1e-16 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10038833 [exp] 74 / 9e-16 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10014948 [exp] 74 / 1e-15 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10019812 [exp] 73 / 2e-15 AT3G19460 208 / 1e-68 Reticulon family protein (.1.2) Lus10028753 [exp] 74 / 6e-15 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10032313 [exp] 72 / 7e-15 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10039307 [exp] 72 / 8e-15 AT1G64090 307 / 4e-106 Reticulan like protein B3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G038500 [exp] 127 / 3e-36 AT2G23640 125 / 3e-36 Reticulan like protein B13 (.1) Potri.015G027300 [exp] 78 / 4e-17 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.012G035600 [exp] 75 / 7e-16 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.013G160900 [exp] 72 / 6e-15 AT4G11220 193 / 4e-61 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Potri.001G300400 [exp] 71 / 7e-15 AT3G19460 145 / 8e-44 Reticulon family protein (.1.2) Potri.003G133600 [exp] 70 / 3e-14 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.001G097700 [exp] 67 / 5e-13 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.014G091200 [exp] 66 / 1e-12 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.002G165400 [exp] 62 / 1e-11 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.019G057400 [exp] 60 / 1e-10 AT3G10915 260 / 6e-88 Reticulon family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10002188 pacid=23158731 polypeptide=Lus10002188 locus=Lus10002188.g ID=Lus10002188.BGIv1.0 annot-version=v1.0 ATGTCCGCCGCGACTAGTTCAGACTCTATGGTGCAAGGAGGCAGCACCACTAGTAGTAGTAATACTAGCGTGGGGGATGTCATTCTATGGAGAAACCCCA AAGTCAGCTCCTTGGTGTTTGTCACGGCCACCCTAACTTGGATGTTATTCAACATCTATAAATTCAGCTTCGTCACCGTTGCTTCATGGTTCGCCATGCT ACTCGTCACTTCCTTGTACCTCTATGCCAACTTCGTCAGATTCTTTCGCAATGAAGAGCCTGATCTATCAGGTCTGCGGTTACTGCTGGAGAAGAAAGCG GTGGAGGTAGAGAAATCAATAAGAGAATGGAGTGTATTAGGGATGCGGTGTGGGTTGAGTGCAACCACAAATCAAGATTGGAAAGTGTTTTCCCTGCTTC TTATTGGGCTGGCCCTTCTTTCATACGCTGGAACCTTGTTCGATTTCCTTACACTGTGTTACATAGGTGTTGTGATGATACTAAGTGTACCGGTGATGTA CAAGAAGAACGAGGACAGAGTGTTGGAGGCTGGGGCGAAGATGCAGCTGCTGATAATACATATGGCTTACAAGGTTGATGAAAAACTGTTGAGGAGGCTC AAGGGCAAGGTGGTGGCGGTGGCGGCAATGGACGGTGACGCCGGGAAGGAGCAGAAGGATGAACTAAAGGAGGATGATGAATTGAAGAAGACGGAGTAG
AA sequence Show only first row Show all	>Lus10002188 pacid=23158731 polypeptide=Lus10002188 locus=Lus10002188.g ID=Lus10002188.BGIv1.0 annot-version=v1.0 MSAATSSDSMVQGGSTTSSSNTSVGDVILWRNPKVSSLVFVTATLTWMLFNIYKFSFVTVASWFAMLLVTSLYLYANFVRFFRNEEPDLSGLRLLLEKKA VEVEKSIREWSVLGMRCGLSATTNQDWKVFSLLLIGLALLSYAGTLFDFLTLCYIGVVMILSVPVMYKKNEDRVLEAGAKMQLLIIHMAYKVDEKLLRRL KGKVVAVAAMDGDAGKEQKDELKEDDELKKTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41600		RTNLB4, BTI3	Reticulan like protein B4, VIR...		Lus10002188 [exp]	0	1
AT4G19130			Replication factor-A protein 1...		Lus10034056 [exp]	1.0	0.9284
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10018132 [exp]	3.9	0.8561
AT1G10385			Vps51/Vps67 family (components...		Lus10017692 [exp]	5.1	0.9153
					Lus10003695 [exp]	7.1	0.8781
					Lus10003774 [exp]	8.2	0.8781
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005596 [exp]	9.2	0.8781
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	10.1	0.8781
					Lus10019456 [exp]	10.7	0.8098
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10015428 [exp]	10.9	0.8781
AT5G53820			Late embryogenesis abundant pr...		Lus10007566 [exp]	11.7	0.8781

Compare expression of checked genes

Lus10002188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.